Rroxscaffold_7G00211970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000212
Physical Location & Seq
Forward (+)
62413172 .. 62420428
7257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211970.1

Sequence Viewer

Length: 543 bp
ATGTCTCCATTGAATGACCAACCATGGAGCATATGGAACACACCTCGTAAGATTGATGCCACATTGAAAAACAAGACAAAAATTGAATTGAAGCATAACATCATATCTTCAAGGATCGCTGGTCCTTTCTTCAAATGTGAAGCTGGAATGATGCAAGAATTGCTTCTCAAAACCGTTCCCAGAAAGCTGATTCTGAAATTGCAGTTTTCTACTTTGCAGCAACTGTTTTGCACAACGATTTCCGTGGACTTCCTTGTAATTTCTGGCCAAATGGTTGATCAAACTTGGTCCTCTGCATCAGCAACTATTACTTTCAGTGAACTACCTCAAAGAAACACCGATACACTTAAATATAGAGCTGGTGGGCACAAAGAAGAGATATCAAACTTTCGCAGAACCGAAGCAAAACGACGGAAGAGAGCAGCAAGGTATGATGAGGTGAAGAAAGAAATGGTCGCCTTGGATGAGAAAAGTTGCCGACTTCAAGGCCATGCAAGATCAAAGAGTTGGAAGCAAAGACAAAAAGGTTGGAAGCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.87

Weight (kDa)

10.16

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 265
AgsI TTSAA 7 cut(s) 13, 67, 86, 91, 111, 133, 485
AluBI AGCT 4 cut(s) 143, 187, 359, 535
AluI AGCT 4 cut(s) 143, 187, 359, 535
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 2 cut(s) 265, 487
ApeKI GCWGC 2 cut(s) 217, 422
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 122, 288
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 2 cut(s) 122, 288
BaeGI GKGCMC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 267
BbvI GCAGC 2 cut(s) 229, 434
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 2 cut(s) 218, 423
BlsI GCNGC 2 cut(s) 219, 424
Bme18I GGWCC 2 cut(s) 122, 288
BmgT120I GGNCC 2 cut(s) 122, 288
BmsI GCATC 3 cut(s) 46, 141, 305
BsaJI CCNNGG 3 cut(s) 23, 243, 459
BseDI CCNNGG 3 cut(s) 23, 243, 459
BseGI GGATG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 229, 434
BshFI GGCC 2 cut(s) 267, 489
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 267, 489
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 114, 277, 497
Bsp19I CCATGG 1 cut(s) 23
BspANI GGCC 2 cut(s) 267, 489
BspPI GGATC 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 23, 243, 459
BssMI GATC 3 cut(s) 114, 277, 497
BssT1I CCWWGG 2 cut(s) 23, 459
Bst4CI ACNGT 2 cut(s) 175, 225
Bst6I CTCTTC 2 cut(s) 369, 410
BstAPI GCANNNNNTGC 1 cut(s) 160
BstDSI CCRYGG 2 cut(s) 23, 243
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 3 cut(s) 117, 280, 500
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 114, 277, 497
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 229, 434
BsuRI GGCC 2 cut(s) 267, 489
BtgI CCRYGG 2 cut(s) 23, 243
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 122, 288
CviAII CATG 2 cut(s) 24, 491
CviJI RGCY 6 cut(s) 143, 187, 267, 359, 489, 535
CviKI_1 RGCY 6 cut(s) 143, 187, 267, 359, 489, 535
DpnI GATC 3 cut(s) 116, 279, 499
DpnII GATC 3 cut(s) 114, 277, 497
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 369, 410
EarI CTCTTC 2 cut(s) 369, 410
Eco130I CCWWGG 2 cut(s) 23, 459
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 122, 288
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 23, 459
ErhI CCWWGG 2 cut(s) 23, 459
FaeI CATG 2 cut(s) 27, 494
FaiI YATR 8 cut(s) 25, 32, 34, 96, 104, 354, 432, 492
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 2 cut(s) 23, 490
FauNDI CATATG 1 cut(s) 32
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 218, 423
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 218, 423
GluI GCNGC 2 cut(s) 218, 423
HaeIII GGCC 2 cut(s) 267, 489
Hin1II CATG 2 cut(s) 27, 494
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 247, 320
Hpy188I TCNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 247, 320
Hpy99I CGWCG 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 175, 225
HpyCH4V TGCA 6 cut(s) 154, 202, 217, 231, 296, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 27, 494
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 114, 277, 497
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 105, 129, 193, 249, 345
Lsp1109I GCAGC 2 cut(s) 229, 434
LweI GCATC 3 cut(s) 46, 141, 305
MalI GATC 3 cut(s) 116, 279, 499
MboI GATC 3 cut(s) 114, 277, 497
MboII GAAGA 5 cut(s) 99, 121, 386, 427, 454
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 5 cut(s) 81, 86, 158, 197, 258
MluNI TGGCCA 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 488, 509
MnlI CCTC 4 cut(s) 54, 301, 336, 430
Mox20I TGGCCA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 160
NcoI CCATGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 32
NdeII GATC 3 cut(s) 114, 277, 497
NlaIII CATG 2 cut(s) 27, 494
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 219, 424
PspPI GGNCC 2 cut(s) 122, 288
PstNI CAGNNNCTG 1 cut(s) 223
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 218, 423
Sau3AI GATC 3 cut(s) 114, 277, 497
Sau96I GGNCC 2 cut(s) 122, 288
SduI GDGCHC 1 cut(s) 369
SetI ASST 9 cut(s) 46, 145, 189, 328, 361, 431, 441, 529, 537
SfaNI GCATC 3 cut(s) 46, 141, 305
SinI GGWCC 2 cut(s) 122, 288
Sse9I AATT 5 cut(s) 81, 86, 158, 197, 258
StyI CCWWGG 2 cut(s) 23, 459
TaaI ACNGT 2 cut(s) 175, 225
TasI AATT 5 cut(s) 81, 86, 158, 197, 258
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 322
TseI GCWGC 2 cut(s) 217, 422
TspGWI ACGGA 2 cut(s) 232, 427
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 122, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.