Rh7CG085800
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000212
Physical Location & Seq
Forward (+)
6432690 .. 6437832
5143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG085800.1

Sequence Viewer

Length: 1350 bp
ATGGGTGAGATTATTTCCTCATGTTCTTCACCCTACAATGTTTATCCAGAAACTACCTCAGCCACATTGCTTCAACAACGCCTCCAATTCATACTTCAGAACCGCCCTGAAACCTGGGTTTACTCCATTTTCTGGAAAGCCTCCAAAGACAGTAACGACGACAACGGCGTTTCTTTGTCATGGGCCGGAGGCCATTTCAGAGGCATTAGAGACTTCTCATCCAAAAAATCAAGCATTCAGAACTCGGATAATAACTACCGACCCAGATTTGGGATGGTCAACAGAGAGATCGAAGCGCTGTGTCATGACGACATGGACTCGGAGAGATTTGAAGACATTAACGGAGACGTGACTGACTCCGAGTGGTTCTACTTCTACACCGTCTCTTTAACACAGTCGTTTGCTGCAGGCCACAATGGGAATTCCAATATTCTGGGCCGTGTGCATTCTTCTAGTGCTTTCATTTGGTTGGCAGGAGATGGTGAGTTTCAGTTCTATGAGTGTGAGAGAGTTAAAGAGGCTCGCATGCATGGAATTCGAACCCTGGTTTGTGTTGCAACTTATAGTGGGGTGCTTGAAGTGGCTTCTTTGGATGTGATTAAAGAAGATTGGGGTTTTGTGCAGCAAGCAAAATCACTTTTTGGAATATCAGACTCCAACTCAAAGCAGGGAAGCCAGGAGGCTCATGTTCACGTTCCTCTGCCCGAAAATGGATTAATGTTTTCAGCAGCTCAAAAGCAGTCGAATACACATGGTGGGTCGTCATCTGATTCAGGGCCTTCTGAAAATATAGAGAATAATCGATCAAAAAAGAGAGGGAGGTCATCAAGCCATGTGAACGGCAGACGAGAATCACCACCACTAAACCATGTGGAGGCAGAGAGACAACGACGTGAAAGGCTGAATCATCGATTCTATGCTCTGAGAGCTGCTGTTCCAAATGTGTCAAGGATGGACAAAGCTTCTTTACTTGCTGATGCAGTTGAGTACATCAATAATCTGAAGACAAAGATTGATAAACTGGAGGCCAAAATCCAAGCACAAACCAAGATACCCAAAGTGGGTAGCACCAACTCCATAAGTTACAGAGCATCTGCTGTTATGGAAGTGGATGTGAAATTTGTAGGCTCTGAAGCAATGATTCGAGTTCGGAGTACGGATAATGAGGACTATCCATATGCAAGATTGATGAATGCACTCAAAGACCTCGAATTGCATATTTATCATGCAAGCATTTCAAGTGTGAAGGAGTTTATGCTTCAAGATGTTGTGGCACGAGTTCCATTTGGATTCACAAGTGAGGAGGCCATGAGAACCGCCATTATAAAGAGTTTGTCATACTTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

449

Amino Acids

50.48

Weight (kDa)

6.52

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 214 3e-39 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 289 - 335 1.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1325
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 2 cut(s) 103, 1317
AcsI RAATTY 3 cut(s) 421, 534, 1118
AcuI CTGAAG 3 cut(s) 80, 1022, 1152
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 989, 1156
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
AgsI TTSAA 5 cut(s) 74, 332, 578, 1239, 1262
AjiI CACGTC 2 cut(s) 349, 893
AjnI CCWGG 3 cut(s) 113, 543, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 3 cut(s) 731, 929, 962
AluI AGCT 3 cut(s) 731, 929, 962
Alw26I GTCTC 4 cut(s) 204, 339, 388, 877
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 7 cut(s) 183, 190, 409, 436, 776, 1026, 1305
ApeKI GCWGC 4 cut(s) 404, 622, 728, 929
ApoI RAATTY 3 cut(s) 421, 534, 1118
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 183, 436, 776
AsuHPI GGTGA 4 cut(s) 17, 21, 494, 846
AsuII TTCGAA 1 cut(s) 538
BauI CACGAG 1 cut(s) 1275
BbsI GAAGAC 2 cut(s) 339, 1010
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 4 cut(s) 391, 634, 740, 916
BccI CCATC 3 cut(s) 268, 473, 946
BceAI ACGGC 3 cut(s) 181, 423, 856
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 3 cut(s) 115, 545, 677
BcoDI GTCTC 4 cut(s) 204, 339, 388, 877
BfaI CTAG 2 cut(s) 453, 1348
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 4 cut(s) 405, 623, 729, 930
BlsI GCNGC 4 cut(s) 406, 624, 730, 931
Bme1390I CCNGG 3 cut(s) 115, 545, 677
BmgBI CACGTC 2 cut(s) 349, 893
BmgT120I GGNCC 3 cut(s) 183, 436, 776
BmrFI CCNGG 3 cut(s) 115, 545, 677
BmsI GCATC 2 cut(s) 967, 1100
BpiI GAAGAC 2 cut(s) 339, 1010
BpmI CTGGAG 1 cut(s) 1043
Bpu10I CCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 538
Bsa29I ATCGAT 2 cut(s) 802, 910
BsaJI CCNNGG 2 cut(s) 114, 543
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
Bse1I ACTGG 1 cut(s) 1026
Bse3DI GCAATG 2 cut(s) 65, 1143
BseBI CCWGG 3 cut(s) 115, 545, 677
BseCI ATCGAT 2 cut(s) 802, 910
BseDI CCNNGG 2 cut(s) 114, 543
BseGI GGATG 5 cut(s) 218, 279, 598, 957, 1117
BseLI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
BseMI GCAATG 2 cut(s) 65, 1143
BseMII CTCAG 2 cut(s) 72, 914
BseNI ACTGG 1 cut(s) 1026
BseRI GAGGAG 1 cut(s) 1316
BseXI GCAGC 4 cut(s) 391, 634, 740, 916
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BshVI ATCGAT 2 cut(s) 802, 910
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
BsmAI GTCTC 4 cut(s) 204, 339, 388, 877
BsmBI CGTCTC 2 cut(s) 339, 388
BsmI GAATGC 3 cut(s) 234, 445, 1198
BsnI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
Bsp119I TTCGAA 1 cut(s) 538
Bsp143I GATC 2 cut(s) 288, 803
BspACI CCGC 2 cut(s) 103, 1317
BspANI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BspCNI CTCAG 2 cut(s) 71, 915
BspDI ATCGAT 2 cut(s) 802, 910
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 65, 1143
BsrI ACTGG 1 cut(s) 1026
BssECI CCNNGG 2 cut(s) 114, 543
BssMI GATC 2 cut(s) 288, 803
BssSI CACGAG 1 cut(s) 1275
Bst2BI CACGAG 1 cut(s) 1275
Bst2UI CCWGG 3 cut(s) 115, 545, 677
Bst4CI ACNGT 3 cut(s) 152, 382, 396
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1231
BstDEI CTNAG 2 cut(s) 58, 923
BstF5I GGATG 5 cut(s) 218, 279, 598, 957, 1117
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 291, 806
BstMAI GTCTC 4 cut(s) 204, 339, 388, 877
BstMBI GATC 2 cut(s) 288, 803
BstMWI GCNNNNNNNGC 1 cut(s) 926
BstNI CCWGG 3 cut(s) 115, 545, 677
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 3 cut(s) 113, 543, 675
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 391, 634, 740, 916
BstV2I GAAGAC 2 cut(s) 339, 1010
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 2 cut(s) 802, 910
BsuRI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BsuTUI ATCGAT 2 cut(s) 802, 910
BtrI CACGTC 2 cut(s) 349, 893
BtsCI GGATG 5 cut(s) 218, 279, 598, 957, 1117
Cac8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1231
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 183, 436, 776
ClaI ATCGAT 2 cut(s) 802, 910
Csp6I GTAC 2 cut(s) 988, 1155
CviQI GTAC 2 cut(s) 988, 1155
DdeI CTNAG 2 cut(s) 58, 923
DpnI GATC 2 cut(s) 290, 805
DpnII GATC 2 cut(s) 288, 803
DraIII CACNNNGTG 1 cut(s) 755
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 80, 1022, 1152
EcoO109I RGGNCCY 1 cut(s) 776
EcoRI GAATTC 2 cut(s) 421, 534
EcoRII CCWGG 3 cut(s) 113, 543, 675
EcoT22I ATGCAT 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 339, 388
FauNDI CATATG 1 cut(s) 1177
Fnu4HI GCNGC 4 cut(s) 405, 623, 729, 930
FokI GGATG 5 cut(s) 205, 286, 605, 964, 1124
Fsp4HI GCNGC 4 cut(s) 405, 623, 729, 930
FspBI CTAG 2 cut(s) 453, 1348
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 405, 623, 729, 930
GsuI CTGGAG 1 cut(s) 1043
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 9 cut(s) 317, 356, 653, 770, 851, 904, 912, 1141, 1290
HpaII CCGG 1 cut(s) 186
HphI GGTGA 4 cut(s) 17, 21, 494, 846
Hpy166II GTNNAC 4 cut(s) 121, 280, 691, 838
Hpy188III TCNNGA 4 cut(s) 47, 133, 305, 1262
Hpy8I GTNNAC 4 cut(s) 121, 280, 691, 838
Hpy99I CGWCG 2 cut(s) 161, 894
HpyAV CCTTC 2 cut(s) 789, 1240
HpyCH4III ACNGT 3 cut(s) 152, 382, 396
HpyCH4IV ACGT 3 cut(s) 348, 693, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 926
HpyF3I CTNAG 2 cut(s) 58, 923
HpySE526I ACGT 3 cut(s) 348, 693, 892
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 288, 803
Lsp1109I GCAGC 4 cut(s) 391, 634, 740, 916
LweI GCATC 2 cut(s) 967, 1100
MaeI CTAG 2 cut(s) 453, 1348
MaeII ACGT 3 cut(s) 348, 693, 892
MaeIII GTNAC 3 cut(s) 152, 349, 1082
MalI GATC 2 cut(s) 290, 805
MboI GATC 2 cut(s) 288, 803
MboII GAAGA 5 cut(s) 18, 344, 441, 617, 1015
MluCI AATT 5 cut(s) 86, 421, 534, 1118, 1211
MlyI GAGTC 3 cut(s) 311, 350, 647
MmeI TCCRAC 1 cut(s) 681
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 5 cut(s) 339, 389, 513, 600, 716
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 115, 545, 677
Mva1269I GAATGC 3 cut(s) 234, 445, 1198
MvaI CCWGG 3 cut(s) 115, 545, 677
MwoI GCNNNNNNNGC 1 cut(s) 926
NdeI CATATG 1 cut(s) 1177
NdeII GATC 2 cut(s) 288, 803
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 538
PaeI GCATGC 1 cut(s) 529
PagI TCATGA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 3 cut(s) 234, 445, 1198
PfeI GAWTC 6 cut(s) 770, 851, 904, 912, 1141, 1290
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 4 cut(s) 406, 624, 730, 931
PleI GAGTC 3 cut(s) 311, 350, 647
PpsI GAGTC 3 cut(s) 311, 350, 647
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 1325
Psp6I CCWGG 3 cut(s) 113, 543, 675
PspGI CCWGG 3 cut(s) 113, 543, 675
PspPI GGNCC 3 cut(s) 183, 436, 776
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 2 cut(s) 989, 1156
RsaNI GTAC 2 cut(s) 988, 1155
SaqAI TTAA 5 cut(s) 339, 389, 513, 600, 716
SatI GCNGC 4 cut(s) 405, 623, 729, 930
Sau3AI GATC 2 cut(s) 288, 803
Sau96I GGNCC 3 cut(s) 183, 436, 776
SchI GAGTC 3 cut(s) 311, 350, 647
ScrFI CCNGG 3 cut(s) 115, 545, 677
SfaNI GCATC 2 cut(s) 967, 1100
SfcI CTRYAG 1 cut(s) 405
SfuI TTCGAA 1 cut(s) 538
SphI GCATGC 1 cut(s) 529
Sse9I AATT 5 cut(s) 86, 421, 534, 1118, 1211
SsiI CCGC 2 cut(s) 103, 1317
SspI AATATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 453, 1348
StyD4I CCNGG 3 cut(s) 113, 543, 675
TaaI ACNGT 3 cut(s) 152, 382, 396
TaiI ACGT 3 cut(s) 351, 696, 895
TaqI TCGA 7 cut(s) 291, 538, 743, 802, 910, 1144, 1209
TasI AATT 5 cut(s) 86, 421, 534, 1118, 1211
TatI WGTACW 1 cut(s) 987
TfiI GAWTC 6 cut(s) 770, 851, 904, 912, 1141, 1290
Tru1I TTAA 5 cut(s) 339, 389, 513, 600, 716
Tru9I TTAA 5 cut(s) 339, 389, 513, 600, 716
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 4 cut(s) 404, 622, 728, 929
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 79, 451, 1205
TspGWI ACGGA 2 cut(s) 357, 1172
Van91I CCANNNNNTGG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 421, 534, 1118
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 453, 1348
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.