Rmu_sc0000765.1_g000001
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000765.1
Physical Location & Seq
Reverse (-)
1 .. 2685
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000765.1_g000001.1.cds

Sequence Viewer

Length: 652 bp
atgacgacgaccgatcatgatgctagtggtgttgatggagaagaaggcttcggctctgggacttcaatctggctaagcggggcccacgagcttcagttcaacaactgtgagaaagccaaagaggcccaaatccacatgatcgagaccttgatctgcatcccaacttccgacggtcaagccaagtcgttgtttggggtggatcagcccgacccggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcgacatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcgcagatttcgactgccagatgaaaagagcgccgaagaaacggggccggaaacccgagctgggcctagacacgccgctcaaccacgtggaggcggagcggcagtggcaagagaagctcagctcgcaagggcggtgttggaaagcgagggaaacagtaagagtagcgagaatcgctgctgatgtctctgacaaggaggagactatgggccggagagctgaggtggacgaagtactagtcagagccggtggaagagagaggagcggtgatgatccgg

Protein Analysis

217

Amino Acids

24.17

Weight (kDa)

5.15

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 226, 454, 475, 639
AciI CCGC 7 cut(s) 78, 224, 452, 470, 475, 508, 639
AclWI GGATC 3 cut(s) 207, 300, 641
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 463
AfaI GTAC 2 cut(s) 305, 609
AfiI CCNNNNNNNGG 3 cut(s) 370, 437, 466
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 66, 100
AhlI ACTAGT 1 cut(s) 610
AluBI AGCT 7 cut(s) 91, 300, 356, 436, 493, 498, 593
AluI AGCT 7 cut(s) 91, 300, 356, 436, 493, 498, 593
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 137, 565, 569
AlwI GGATC 3 cut(s) 207, 300, 641
Ama87I CYCGRG 2 cut(s) 227, 431
AoxI GGCC 5 cut(s) 81, 123, 421, 439, 583
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 551
ArsI GACNNNNNNTTYG 2 cut(s) 597, 629
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 6 cut(s) 81, 82, 124, 421, 439, 583
AsuC2I CCSGG 2 cut(s) 212, 371
AvaI CYCGRG 2 cut(s) 227, 431
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 2 cut(s) 85, 358
BauI CACGAG 1 cut(s) 86
BbrPI CACGTG 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 538
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 3 cut(s) 36, 254, 288
BcnI CCSGG 2 cut(s) 212, 371
BcoDI GTCTC 3 cut(s) 137, 565, 569
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 4 cut(s) 24, 336, 443, 611
BfoI RGCGCY 1 cut(s) 410
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 452, 476, 552
BlpI GCTNAGC 2 cut(s) 74, 494
BlsI GCNGC 3 cut(s) 453, 477, 553
BmcAI AGTACT 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 212, 371
BmeT110I CYCGRG 2 cut(s) 227, 431
BmgT120I GGNCC 6 cut(s) 81, 82, 124, 421, 439, 583
BmiI GGNNCC 3 cut(s) 82, 83, 422
BmrFI CCNGG 2 cut(s) 212, 371
BmsI GCATC 2 cut(s) 10, 165
Bpu10I CCTNAGC 1 cut(s) 594
Bpu1102I GCTNAGC 2 cut(s) 74, 494
BpuMI CCSGG 2 cut(s) 212, 371
BsaAI YACGTR 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 437, 466
Bse118I RCCGGY 2 cut(s) 275, 620
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 155
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 370, 437, 466
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 508, 585
BseRI GAGGAG 2 cut(s) 587, 649
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 538
BseYI CCCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 5 cut(s) 83, 125, 423, 441, 585
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 2 cut(s) 227, 431
BsiSI CCGG 8 cut(s) 212, 241, 276, 371, 424, 586, 621, 650
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 370, 437, 466
BsmAI GTCTC 3 cut(s) 137, 565, 569
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 5 cut(s) 83, 125, 423, 441, 585
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 2 cut(s) 227, 431
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 85, 358
Bsp143I GATC 6 cut(s) 13, 138, 150, 199, 292, 646
Bsp1720I GCTNAGC 2 cut(s) 74, 494
BspACI CCGC 7 cut(s) 78, 224, 452, 470, 475, 508, 639
BspANI GGCC 5 cut(s) 83, 125, 423, 441, 585
BspCNI CTCAG 2 cut(s) 507, 586
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 82, 83, 422
BspPI GGATC 3 cut(s) 207, 300, 641
BspTNI GGTCTC 1 cut(s) 137
BsrBI CCGCTC 4 cut(s) 226, 454, 475, 639
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 275, 620
BssAI RCCGGY 2 cut(s) 275, 620
BssMI GATC 6 cut(s) 13, 138, 150, 199, 292, 646
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 107, 173, 532
Bst6I CTCTTC 2 cut(s) 282, 622
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 277, 281, 500
BstDEI CTNAG 3 cut(s) 74, 494, 594
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 6 cut(s) 16, 141, 153, 202, 295, 649
BstMAI GTCTC 3 cut(s) 137, 565, 569
BstMBI GATC 6 cut(s) 13, 138, 150, 199, 292, 646
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 5 cut(s) 122, 481, 490, 499, 548
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 210, 369
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 538
BsuRI GGCC 5 cut(s) 83, 125, 423, 441, 585
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 277, 281, 500
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 2 cut(s) 275, 620
Cfr13I GGNCC 6 cut(s) 81, 82, 124, 421, 439, 583
Csp6I GTAC 2 cut(s) 304, 608
CviAII CATG 3 cut(s) 17, 136, 323
CviQI GTAC 2 cut(s) 304, 608
DdeI CTNAG 3 cut(s) 74, 494, 594
DpnI GATC 6 cut(s) 15, 140, 152, 201, 294, 648
DpnII GATC 6 cut(s) 13, 138, 150, 199, 292, 646
Eam1104I CTCTTC 2 cut(s) 282, 622
EarI CTCTTC 2 cut(s) 282, 622
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 85, 358
Eco31I GGTCTC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 463
Eco88I CYCGRG 2 cut(s) 227, 431
EcoICRI GAGCTC 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 85, 358
FaeI CATG 3 cut(s) 20, 139, 326
FaiI YATR 4 cut(s) 18, 137, 324, 581
FaqI GGGAC 1 cut(s) 73
FatI CATG 3 cut(s) 16, 135, 322
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 452, 476, 552
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 2 cut(s) 85, 358
Fsp4HI GCNGC 3 cut(s) 452, 476, 552
FspBI CTAG 4 cut(s) 24, 336, 443, 611
GlaI GCGC 1 cut(s) 408
GluI GCNGC 3 cut(s) 452, 476, 552
GsaI CCCAGC 1 cut(s) 440
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 5 cut(s) 83, 125, 423, 441, 585
HapII CCGG 8 cut(s) 212, 241, 276, 371, 424, 586, 621, 650
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 20, 139, 326
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 1 cut(s) 546
HpaII CCGG 8 cut(s) 212, 241, 276, 371, 424, 586, 621, 650
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 4 cut(s) 169, 360, 565, 617
Hpy188III TCNNGA 2 cut(s) 17, 142
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 2 cut(s) 10, 173
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 3 cut(s) 107, 173, 532
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 156, 283
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 481, 490, 499, 548
HpyF3I CTNAG 3 cut(s) 74, 494, 594
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 20, 139, 326
HspAI GCGC 1 cut(s) 407
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 6 cut(s) 13, 138, 150, 199, 292, 646
LmnI GCTCC 4 cut(s) 353, 361, 472, 636
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 2 cut(s) 10, 165
MaeI CTAG 4 cut(s) 24, 336, 443, 611
MaeII ACGT 1 cut(s) 462
MalI GATC 6 cut(s) 15, 140, 152, 201, 294, 648
MbiI CCGCTC 4 cut(s) 226, 454, 475, 639
MboI GATC 6 cut(s) 13, 138, 150, 199, 292, 646
MboII GAAGA 6 cut(s) 53, 299, 355, 358, 424, 639
MhlI GDGCHC 2 cut(s) 85, 358
MmeI TCCRAC 2 cut(s) 192, 494
MnlI CCTC 7 cut(s) 115, 283, 460, 516, 565, 589, 627
MroNI GCCGGC 1 cut(s) 275
MspI CCGG 8 cut(s) 212, 241, 276, 371, 424, 586, 621, 650
MspR9I CCNGG 2 cut(s) 212, 371
MwoI GCNNNNNNNGC 5 cut(s) 122, 481, 490, 499, 548
NaeI GCCGGC 1 cut(s) 277
NciI CCSGG 2 cut(s) 212, 371
NdeII GATC 6 cut(s) 13, 138, 150, 199, 292, 646
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 20, 139, 326
NlaIV GGNNCC 3 cut(s) 82, 83, 422
NspI RCATGY 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 227
PagI TCATGA 1 cut(s) 16
PciI ACATGT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 546
PkrI GCNGC 3 cut(s) 453, 477, 553
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 463
PscI ACATGT 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 358
PspCI CACGTG 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 82, 83, 422
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 6 cut(s) 81, 82, 124, 421, 439, 583
PspXI VCTCGAGB 1 cut(s) 227
RsaI GTAC 2 cut(s) 305, 609
RsaNI GTAC 2 cut(s) 304, 608
SacI GAGCTC 1 cut(s) 358
SatI GCNGC 3 cut(s) 452, 476, 552
Sau3AI GATC 6 cut(s) 13, 138, 150, 199, 292, 646
Sau96I GGNCC 6 cut(s) 81, 82, 124, 421, 439, 583
ScaI AGTACT 1 cut(s) 609
ScrFI CCNGG 2 cut(s) 212, 371
SduI GDGCHC 2 cut(s) 85, 358
SfaNI GCATC 2 cut(s) 10, 165
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 610
SsiI CCGC 7 cut(s) 78, 224, 452, 470, 475, 508, 639
SspMI CTAG 4 cut(s) 24, 336, 443, 611
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 210, 369
TaaI ACNGT 3 cut(s) 107, 173, 532
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 141, 228, 264, 387
TaqII GACCGA 1 cut(s) 26
TatI WGTACW 1 cut(s) 607
TauI GCSGC 2 cut(s) 454, 478
TfiI GAWTC 1 cut(s) 546
TscAI CASTG 1 cut(s) 485
TseI GCWGC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 223, 413
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 1 cut(s) 485
XceI RCATGY 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 4 cut(s) 24, 336, 443, 611
ZrmI AGTACT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.