RLG00000002911
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000212
Physical Location & Seq
Reverse (-)
41647322 .. 41647654
333 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002911

Sequence Viewer

Length: 333 bp
ATGGAAGCCAGTTTTCCACCCCATAATCTTTGTCAAGAAACCTCTGCAGCCACACTTCAACAACGCCTCGAGTTCATACTTCCAAACCGTCCTGAATTTTGGGTCTACTCCATTTTCTGGCAAGCCTCCAAAGACGGCCACAATGCCGTTTCGTTATCATGGGCCGGTGGTCATTTCCGAAGGACCAGGGACTTCTCATCCAAAACATCGAGCACTAATAAGTTGGATAACAATTACCAACCAATAATAGGGTTCGATCTGGAGACACCAAAGAAGGGGATCAACAAAGAAGTCGAAGTTTTGTTCCATGTAGACAGTGGCGGACGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

111

Amino Acids

12.53

Weight (kDa)

6.9

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 19 - 73 1.2e-09 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 2 cut(s) 105, 312
AciI CCGC 1 cut(s) 321
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 117, 248, 275
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 136, 162
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 162, 183
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 131, 151
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 162, 183
BmrFI CCNGG 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 248, 275
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 3 cut(s) 117, 248, 275
BseNI ACTGG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 138, 164
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 117, 248, 275
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 138, 164
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 256, 279
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 138, 164
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 256, 279
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 89, 317
BstC8I GCNNGC 1 cut(s) 123
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 259, 282
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 256, 279
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 138, 164
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 162, 183
CviAII CATG 2 cut(s) 159, 308
CviJI RGCY 5 cut(s) 8, 50, 125, 138, 164
CviKI_1 RGCY 5 cut(s) 8, 50, 125, 138, 164
DpnI GATC 2 cut(s) 258, 281
DpnII GATC 2 cut(s) 256, 279
EaeI YGGCCR 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 162, 311
FaiI YATR 5 cut(s) 24, 77, 160, 309, 331
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 158, 307
FblI GTMKAC 2 cut(s) 105, 312
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 2 cut(s) 138, 164
HapII CCGG 1 cut(s) 165
Hin1II CATG 2 cut(s) 162, 311
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 106, 313
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 3 cut(s) 35, 92, 260
Hpy8I GTNNAC 2 cut(s) 106, 313
HpyAV CCTTC 2 cut(s) 174, 268
HpyCH4III ACNGT 2 cut(s) 89, 317
HpyCH4V TGCA 1 cut(s) 47
Hsp92II CATG 2 cut(s) 162, 311
Kzo9I GATC 2 cut(s) 256, 279
LpnPI CCDG 7 cut(s) 22, 103, 105, 172, 178, 199, 245
Lsp1109I GCAGC 1 cut(s) 59
MalI GATC 2 cut(s) 258, 281
MboI GATC 2 cut(s) 256, 279
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 95, 232
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 3 cut(s) 52, 77, 136
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NdeII GATC 2 cut(s) 256, 279
NlaIII CATG 2 cut(s) 162, 311
PaeR7I CTCGAG 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 2 cut(s) 162, 183
PspXI VCTCGAGB 1 cut(s) 68
PstI CTGCAG 1 cut(s) 49
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 256, 279
Sau96I GGNCC 2 cut(s) 162, 183
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 215
SetI ASST 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 95, 232
SsiI CCGC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 89, 317
TaqI TCGA 4 cut(s) 69, 209, 255, 294
TasI AATT 2 cut(s) 95, 232
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 105, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.