Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007491.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

5522 .. 6577

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007491.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgttgtacctgaggtgcaagcagagtgctggctttgtagagcttttccttcatctatcgggttgtagccaagttagcactttcaattccttcaggcaacccaaaattttgcttgattggattagtttggagataaatgaaggaagaaaatgtgaagcggctgatctgttttggtttccatgggaacttgtaagagagttgctgctattgcagaagcaaagcaatgataatggtggagaagtcgaaatggaaagattgaaaattaataaggccttcggctcagggacctcaatctggctgagcggggcccacgagcttcagttcaacaaccgcgagagagccaaagaggcccaaatccacgggattgagaccttgatctgcatcccaacttccaacggtgtttttgaaatgggttcctccggtttaatcagagagaactgggggttgatccagcaagccaagtcgttattcgggtcggatcagcccgacccggaaacaagaccgctcggcatcattgccggcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

5.44

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	303, 505
AccII	CGCG	1 cut(s)	333
AciI	CCGC	4 cut(s)	158, 303, 331, 503
AclWI	GGATC	2 cut(s)	442, 486
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	2 cut(s)	76, 302
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	85, 259, 325, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	2 cut(s)	43, 316
AluI	AGCT	2 cut(s)	43, 316
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	442, 486
AoxI	GGCC	3 cut(s)	270, 306, 348
ApaI	GGGCCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	105
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	4 cut(s)	285, 306, 307, 349
AsuC2I	CCSGG	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	285
AxyI	CCTNAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	2 cut(s)	159, 203
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	160, 204
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	285, 306, 307, 349
BmiI	GGNNCC	4 cut(s)	286, 307, 308, 415
BmrFI	CCNGG	1 cut(s)	491
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	390, 519
BmuI	ACTGGG	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	179, 358
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	443
Bse21I	CCTNAGG	1 cut(s)	11
Bse3DI	GCAATG	2 cut(s)	229, 513
Bse8I	GATNNNNATC	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	179, 358
BseGI	GGATG	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	229, 513
BseMII	CTCAG	2 cut(s)	290, 294
BseNI	ACTGG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	272, 308, 350
BsiSI	CCGG	3 cut(s)	420, 491, 519
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	272, 308, 350
Bso31I	GGTCTC	1 cut(s)	362
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	163, 375, 447, 478
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	4 cut(s)	158, 303, 331, 503
BspANI	GGCC	3 cut(s)	272, 308, 350
BspCNI	CTCAG	2 cut(s)	291, 293
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	286, 307, 308, 415
BspPI	GGATC	2 cut(s)	442, 486
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	2 cut(s)	303, 505
BsrDI	GCAATG	2 cut(s)	229, 513
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	179, 358
BssMI	GATC	4 cut(s)	163, 375, 447, 478
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	20, 31, 456, 520
BstDEI	CTNAG	3 cut(s)	11, 280, 299
BstDSI	CCRYGG	2 cut(s)	179, 358
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	166, 378, 450, 481
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	163, 375, 447, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 208, 347
BstSCI	CCNGG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	272, 308, 350
BtgI	CCRYGG	2 cut(s)	179, 358
BtsCI	GGATG	1 cut(s)	381
Cac8I	GCNNGC	4 cut(s)	20, 31, 456, 520
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	4 cut(s)	285, 306, 307, 349
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	11, 280, 299
DpnI	GATC	4 cut(s)	165, 377, 449, 480
DpnII	GATC	4 cut(s)	163, 375, 447, 478
Eco130I	CCWWGG	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	76, 302
Eco81I	CCTNAGG	1 cut(s)	11
EcoO109I	RGGNCCY	2 cut(s)	285, 306
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	2 cut(s)	159, 203
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	159, 203
GluI	GCNGC	2 cut(s)	159, 203
HaeIII	GGCC	3 cut(s)	272, 308, 350
HapII	CCGG	3 cut(s)	420, 491, 519
Hin1II	CATG	1 cut(s)	183
HpaII	CCGG	3 cut(s)	420, 491, 519
Hpy188I	TCNGA	2 cut(s)	431, 478
HpyAV	CCTTC	4 cut(s)	59, 100, 134, 283
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	18, 211, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 208, 347
HpyF3I	CTNAG	3 cut(s)	11, 280, 299
Hsp92II	CATG	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	518
KroNI	GCCGGC	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	163, 375, 447, 478
LpnPI	CCDG	9 cut(s)	15, 23, 79, 267, 280, 424, 433, 464, 504
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	390, 519
MalI	GATC	4 cut(s)	165, 377, 449, 480
MbiI	CCGCTC	2 cut(s)	303, 505
MboI	GATC	4 cut(s)	163, 375, 447, 478
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	85, 105, 261
MmeI	TCCRAC	2 cut(s)	417, 456
MnlI	CCTC	4 cut(s)	6, 298, 340, 427
MroNI	GCCGGC	1 cut(s)	518
MseI	TTAA	2 cut(s)	264, 425
MspI	CCGG	3 cut(s)	420, 491, 519
MspR9I	CCNGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	75, 208, 347
NaeI	GCCGGC	1 cut(s)	520
NciI	CCSGG	1 cut(s)	491
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	163, 375, 447, 478
NgoMIV	GCCGGC	1 cut(s)	518
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	4 cut(s)	286, 307, 308, 415
NmeAIII	GCCGAG	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	160, 204
PpuMI	RGGWCCY	1 cut(s)	285
PshBI	ATTAAT	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	286, 307, 308, 415
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	4 cut(s)	285, 306, 307, 349
PspPPI	RGGWCCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	264, 425
SatI	GCNGC	2 cut(s)	159, 203
Sau3AI	GATC	4 cut(s)	163, 375, 447, 478
Sau96I	GGNCC	4 cut(s)	285, 306, 307, 349
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	6 cut(s)	12, 17, 45, 290, 318, 374
SfaNI	GCATC	2 cut(s)	390, 519
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	85, 105, 261
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	4 cut(s)	158, 303, 331, 503
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	85, 105, 261
TauI	GCSGC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	264, 425
Tru9I	TTAA	2 cut(s)	264, 425
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	41, 153
VpaK11BI	GGWCC	1 cut(s)	285
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.