Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004002.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

32401 .. 32871

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004002.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgggttcctccggtttgattagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcggatcagccctacccggaaacaagatcgctcgagttcatcaaccggaacttctccattttcgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagaaagaagaagaacggagctccgaacccaaacccggacttcgcagattccgactgccagatgaaaagagtgccgaagaaacagggcaggaaacccgggctgggccgagacacgccgctcaaccaagtggaggaggagcggcagtggcgggagaagctcacctcgcaagggcggcattggaagcgagggagtgagcgtggaggtgaggaaggcggcgttgaaaacgagggagtgagcccggaagaaggaagaagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

156

Amino Acids

17.71

Weight (kDa)

9.04

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	325, 346
AciI	CCGC	5 cut(s)	323, 346, 355, 379, 420
AclWI	GGATC	3 cut(s)	34, 78, 171
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	5 cut(s)	241, 308, 337, 375, 452
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	171, 227, 364
AluI	AGCT	3 cut(s)	171, 227, 364
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	3 cut(s)	34, 78, 171
Ama87I	CYCGRG	2 cut(s)	98, 302
AoxI	GGCC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	5 cut(s)	83, 242, 303, 304, 446
AsuHPI	GGTGA	2 cut(s)	358, 422
AvaI	CYCGRG	2 cut(s)	98, 302
BanII	GRGCYC	2 cut(s)	229, 446
Bbv12I	GWGCWC	1 cut(s)	229
BcnI	CCSGG	5 cut(s)	83, 242, 303, 304, 446
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	4 cut(s)	323, 347, 380, 421
BlsI	GCNGC	4 cut(s)	324, 348, 381, 422
Bme1390I	CCNGG	5 cut(s)	83, 242, 303, 304, 446
BmeT110I	CYCGRG	2 cut(s)	98, 302
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	5 cut(s)	83, 242, 303, 304, 446
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	40
BpuMI	CCSGG	5 cut(s)	83, 242, 303, 304, 446
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	11, 111
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 388, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 308, 337, 375, 452
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	5 cut(s)	241, 308, 337, 375, 452
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	353, 356
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	2 cut(s)	98, 302
BsiSI	CCGG	7 cut(s)	12, 83, 112, 147, 242, 303, 446
BslI	CCNNNNNNNGG	5 cut(s)	241, 308, 337, 375, 452
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	312
BsoBI	CYCGRG	2 cut(s)	98, 302
Bsp1286I	GDGCHC	2 cut(s)	229, 446
Bsp143I	GATC	4 cut(s)	39, 70, 92, 163
BspACI	CCGC	5 cut(s)	323, 346, 355, 379, 420
BspANI	GGCC	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	3 cut(s)	34, 78, 171
BsrBI	CCGCTC	2 cut(s)	325, 346
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	39, 70, 92, 163
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	48, 148, 152
BstKTI	GATC	4 cut(s)	42, 73, 95, 166
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	4 cut(s)	39, 70, 92, 163
BstMWI	GCNNNNNNNGC	5 cut(s)	352, 361, 370, 379, 388
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	5 cut(s)	81, 240, 301, 302, 444
BsuRI	GGCC	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	48, 148, 152
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	310
Cfr9I	CCCGGG	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	8 cut(s)	50, 76, 171, 227, 307, 312, 364, 444
CviKI_1	RGCY	8 cut(s)	50, 76, 171, 227, 307, 312, 364, 444
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	4 cut(s)	41, 72, 94, 165
DpnII	GATC	4 cut(s)	39, 70, 92, 163
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	229, 446
Eco53kI	GAGCTC	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	98, 302
EcoICRI	GAGCTC	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	229, 446
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	323, 347, 380, 421
FriOI	GRGCYC	2 cut(s)	229, 446
Fsp4HI	GCNGC	4 cut(s)	323, 347, 380, 421
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	4 cut(s)	323, 347, 380, 421
GsaI	CCCAGC	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	7 cut(s)	12, 83, 112, 147, 242, 303, 446
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	7 cut(s)	12, 83, 112, 147, 242, 303, 446
HphI	GGTGA	2 cut(s)	358, 422
Hpy188I	TCNGA	3 cut(s)	70, 231, 259
Hpy188III	TCNNGA	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	410, 446
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	352, 361, 370, 379, 388
Hsp92II	CATG	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	39, 70, 92, 163
LmnI	GCTCC	3 cut(s)	224, 232, 343
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	207
MalI	GATC	4 cut(s)	41, 72, 94, 165
MbiI	CCGCTC	2 cut(s)	325, 346
MboI	GATC	4 cut(s)	39, 70, 92, 163
MboII	GAAGA	7 cut(s)	170, 226, 229, 295, 461, 468, 471
MhlI	GDGCHC	2 cut(s)	229, 446
MmeI	TCCRAC	2 cut(s)	48, 282
MnlI	CCTC	9 cut(s)	19, 154, 331, 334, 379, 386, 401, 406, 427
MroNI	GCCGGC	1 cut(s)	146
MspI	CCGG	7 cut(s)	12, 83, 112, 147, 242, 303, 446
MspR9I	CCNGG	5 cut(s)	83, 242, 303, 304, 446
MwoI	GCNNNNNNNGC	5 cut(s)	352, 361, 370, 379, 388
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	5 cut(s)	83, 242, 303, 304, 446
NdeII	GATC	4 cut(s)	39, 70, 92, 163
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	324, 348, 381, 422
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	98
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	229
SatI	GCNGC	4 cut(s)	323, 347, 380, 421
Sau3AI	GATC	4 cut(s)	39, 70, 92, 163
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	5 cut(s)	83, 242, 303, 304, 446
SduI	GDGCHC	2 cut(s)	229, 446
SetI	ASST	5 cut(s)	173, 229, 366, 371, 412
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	5 cut(s)	323, 346, 355, 379, 420
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	5 cut(s)	81, 240, 301, 302, 444
TaqI	TCGA	2 cut(s)	99, 129
TauI	GCSGC	4 cut(s)	325, 349, 382, 423
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	94, 284
TspGWI	ACGGA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.