Rmu_sc0013486.1_g000001
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013486.1
OG0000212
Physical Location & Seq
Forward (+)
1 .. 683
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013486.1_g000001.1.cds

Sequence Viewer

Length: 574 bp
gccttcggctctgggacctcaatctggctgagcggggcccacgagcttcagttcaacaactgtgagagagccaaagaggcccaaatccactggatcgagaccttgatctgcatcccaacttccaacggtgttcttgaaatgggttcctctggtttgatcagagagaactgggggttgatcaagcaagccaagtcgttgttcaggtcggatcagccagacccggaaacaagaccgctcgagttcatcaactggaacttctccatttttgacatcggcatcattgccggtgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaactcggacttcgcagattccgactgccagatgaaaagagcgtcgaagaaacggggcctgaaacccgtgttgggccgagacacgccgctcgaccacgtggaggcggagcggcaacggcgggagaagctcacctcacaagggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggtggcgttggaagcgagg

Protein Analysis

191

Amino Acids

21.36

Weight (kDa)

7.17

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 33, 235, 463, 484
AciI CCGC 7 cut(s) 33, 233, 461, 479, 484, 493, 517
AclWI GGATC 3 cut(s) 101, 216, 309
AcuI CTGAAG 1 cut(s) 32
AcvI CACGTG 1 cut(s) 472
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 5 cut(s) 24, 379, 446, 475, 513
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 55, 137
AjuI GAANNNNNNNTTGG 5 cut(s) 182, 214, 428, 460, 546
AluBI AGCT 4 cut(s) 46, 309, 365, 502
AluI AGCT 4 cut(s) 46, 309, 365, 502
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 92, 447
AlwI GGATC 3 cut(s) 101, 216, 309
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 4 cut(s) 36, 78, 430, 448
ApaI GGGCCC 1 cut(s) 40
AspS9I GGNCC 6 cut(s) 15, 36, 37, 79, 430, 448
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 496, 560
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 40, 367
BauI CACGAG 1 cut(s) 41
BbrPI CACGTG 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 506
BclI TGATCA 2 cut(s) 156, 177
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 92, 447
BfaI CTAG 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 461, 485, 518
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 3 cut(s) 462, 486, 519
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 6 cut(s) 15, 36, 37, 79, 430, 448
BmiI GGNNCC 5 cut(s) 16, 37, 38, 145, 431
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 120, 285
BmuI ACTGGG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 379, 446, 475, 513
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 95, 173, 254
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 110
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 5 cut(s) 24, 379, 446, 475, 513
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 95, 173, 254
BseSI GKGCMC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 4 cut(s) 38, 80, 432, 450
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 221, 285
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 5 cut(s) 24, 379, 446, 475, 513
BsmAI GTCTC 2 cut(s) 92, 447
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 4 cut(s) 38, 80, 432, 450
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 236
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 40, 367
Bsp143I GATC 6 cut(s) 93, 105, 156, 177, 208, 301
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 7 cut(s) 33, 233, 461, 479, 484, 493, 517
BspANI GGCC 4 cut(s) 38, 80, 432, 450
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 5 cut(s) 16, 37, 38, 145, 431
BspPI GGATC 3 cut(s) 101, 216, 309
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 4 cut(s) 33, 235, 463, 484
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 3 cut(s) 95, 173, 254
BssAI RCCGGY 1 cut(s) 284
BssMI GATC 6 cut(s) 93, 105, 156, 177, 208, 301
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 62, 128
Bst6I CTCTTC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 6 cut(s) 96, 108, 159, 180, 211, 304
BstMAI GTCTC 2 cut(s) 92, 447
BstMBI GATC 6 cut(s) 93, 105, 156, 177, 208, 301
BstMWI GCNNNNNNNGC 5 cut(s) 77, 490, 499, 526, 567
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 40
BsuRI GGCC 4 cut(s) 38, 80, 432, 450
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 6 cut(s) 15, 36, 37, 79, 430, 448
CseI GACGC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 332
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 29
DpnI GATC 6 cut(s) 95, 107, 158, 179, 210, 303
DpnII GATC 6 cut(s) 93, 105, 156, 177, 208, 301
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 494
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 40, 367
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 3 cut(s) 15, 36, 430
EcoT38I GRGCYC 2 cut(s) 40, 367
FaeI CATG 1 cut(s) 335
FaiI YATR 1 cut(s) 333
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 331
FauI CCCGC 2 cut(s) 26, 486
FbaI TGATCA 2 cut(s) 156, 177
Fnu4HI GCNGC 3 cut(s) 461, 485, 518
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 2 cut(s) 40, 367
Fsp4HI GCNGC 3 cut(s) 461, 485, 518
FspBI CTAG 1 cut(s) 345
GluI GCNGC 3 cut(s) 461, 485, 518
HaeIII GGCC 4 cut(s) 38, 80, 432, 450
HapII CCGG 2 cut(s) 221, 285
HgaI GACGC 1 cut(s) 405
Hin1II CATG 1 cut(s) 335
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 221, 285
HphI GGTGA 2 cut(s) 496, 560
Hpy188I TCNGA 5 cut(s) 161, 208, 369, 382, 397
Hpy188III TCNNGA 2 cut(s) 97, 134
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 13, 548
HpyCH4III ACNGT 2 cut(s) 62, 128
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 111, 292
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 490, 499, 526, 567
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 1 cut(s) 335
Ksp22I TGATCA 2 cut(s) 156, 177
Kzo9I GATC 6 cut(s) 93, 105, 156, 177, 208, 301
LmnI GCTCC 3 cut(s) 362, 370, 481
LweI GCATC 2 cut(s) 120, 285
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 471
MalI GATC 6 cut(s) 95, 107, 158, 179, 210, 303
MbiI CCGCTC 4 cut(s) 33, 235, 463, 484
MboI GATC 6 cut(s) 93, 105, 156, 177, 208, 301
MboII GAAGA 4 cut(s) 308, 364, 367, 433
MhlI GDGCHC 2 cut(s) 40, 367
MmeI TCCRAC 5 cut(s) 147, 186, 420, 503, 544
MspI CCGG 2 cut(s) 221, 285
MspR9I CCNGG 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 77, 490, 499, 526, 567
NciI CCSGG 1 cut(s) 221
NdeII GATC 6 cut(s) 93, 105, 156, 177, 208, 301
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 5 cut(s) 16, 37, 38, 145, 431
NmeAIII GCCGAG 1 cut(s) 476
NspI RCATGY 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 462, 486, 519
PmaCI CACGTG 1 cut(s) 472
PmlI CACGTG 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 15
PscI ACATGT 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 15
PspCI CACGTG 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 16, 37, 38, 145, 431
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 6 cut(s) 15, 36, 37, 79, 430, 448
PspPPI RGGWCCY 1 cut(s) 15
PspXI VCTCGAGB 1 cut(s) 236
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 367
SatI GCNGC 3 cut(s) 461, 485, 518
Sau3AI GATC 6 cut(s) 93, 105, 156, 177, 208, 301
Sau96I GGNCC 6 cut(s) 15, 36, 37, 79, 430, 448
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 2 cut(s) 40, 367
SfaNI GCATC 2 cut(s) 120, 285
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 15
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 7 cut(s) 33, 233, 461, 479, 484, 493, 517
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 62, 128
TaiI ACGT 1 cut(s) 474
TaqI TCGA 4 cut(s) 96, 237, 419, 465
TauI GCSGC 3 cut(s) 463, 487, 520
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 232, 422
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.