MD06G1120200.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000212
Physical Location & Seq
Forward (+)
25996395 .. 25998390
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1120200.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGGAGGGGACTAATTCCTCCTGTTCTTCATACAATTTTGGTCAAGAAAACTCACCCACACTTCAACGTCTCCAGTTCATAATTCAGAATAGGCCCGTACGGTGGGTCTATTCAATTTTCTGGCAAGCCTCATCAAAAGACAGCGATGACCTAGTTTCTTTGTCGTGGGCTGGTGGCCACTTTCGAAGCACTAGGGACTTGGCCTCCATACAAAGTTACAACAAAGCCAATGTTTTCGAAGTTGTGGAGAGGAAGAAGGGGATTAGCAGAGAAGTTGAAGCTCTTTTCTATGAAGGCATGGATTTGGATGGTGGAGACGTTACCGACGCTGAGTGGTTTTACTTTTACACTGACTCTTTAACCCAGTCATTTACTGCCGGCCACGGTAATAGTAACATTCTGGGCCGTACGTTTTGTTCTGGTGGTTTTGTTTGGCTGGCAGGTGATCATGAGCTTCAGTTCTATGAGTGTGAGAGAGTGAAGAAAGCAAGAATGCATGGAATTCAAACTTTGGTTTGTATTGCAACTTCATGCGGAGTAGTTGAACTAGCTTCTTTGGATGCGATCAAAGTAGATTGGGATCTTGTGCAGATATCAAAGTCGCTTTTCGGATCAAAGAACAACAACAACATGGTCTCAAAGCAGCTGAGCAGCAGCCGTGAGGACCATGTACTTGTTCCGCTACTAGAAAGTGGAATGTTTTCGGGAGCTGAACAAAGAGACTGGACAACACAAGGTGGTACAAAAGAAGTACCTCCTGTGACTATGGGTGGATCATCCGACTCAGGACCTTCCGACTCTGTTGGAAATTTCACCTCTGAGAATATGGAGAACATACGACTGAAAAAGAGAGGACGCTCATCAAACCGTGAAACTGGTAGATCAGAAACACCAATAAACCATGTTGAGGCAGAGAGACAGAGGCGAGAGAAGCTTAACCGTCGATTCTATGCCCTCCGCGCCGTTGTTCCCAATGTTTCCAGAATGGACAAAGCTTCTTTACTTTCTGATGCAGTTGTATACATCAATGAGCTGAAAGCAAGGGTTGAGCAACTGGAGGCCAAAATCCAAGCACAACACCTGAAGCCCGTTGTTGACATTGGAGGCCAAACCACCAGCTCCATAATTGATCCTCATCAAACAAGGCCGCGGCTATCATCAAGTTATAATAATAGAGCAGCTGGGGCTATGGAAATAGAAGTGAAGATCGTAGGCTCAGAAGCCATGATACGAGTTCAGTGTCCGGACTGCGATTACCCTAATGCTAGATTGATGAATGCACTCAAAGACCTGGAGTTACAAGTTTATCATGCAAGCATATCAAGTGTTAAAGGGTTGATGCTTCAAGATGTTGTAGCGAGAGTGCCTCAGGGTTTCACAAGTGAGGAGGCCCTGAGAATTGCTATTATAAATAGATGGTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

476

Amino Acids

53.08

Weight (kDa)

6.35

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 22 - 203 2.7e-37 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 300 - 346 9.6e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 398 - 469 1.3e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1167, 1409
AarI CACCTGC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 1020
AccII CGCG 2 cut(s) 960, 1150
AccIII TCCGGA 1 cut(s) 1243
AciI CCGC 5 cut(s) 534, 680, 958, 1148, 1150
AclWI GGATC 4 cut(s) 588, 619, 781, 1124
AcoI YGGCCR 2 cut(s) 175, 379
AcsI RAATTY 2 cut(s) 501, 808
AcuI CTGAAG 2 cut(s) 440, 1103
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 6 cut(s) 99, 409, 672, 742, 753, 1421
AfiI CCNNNNNNNGG 2 cut(s) 102, 907
AgsI TTSAA 6 cut(s) 65, 114, 278, 506, 545, 1346
AjnI CCWGG 1 cut(s) 1290
Alw26I GTCTC 5 cut(s) 74, 309, 640, 714, 910
AlwI GGATC 4 cut(s) 588, 619, 781, 1124
Aor13HI TCCGGA 1 cut(s) 1243
AoxI GGCC 9 cut(s) 92, 175, 201, 379, 403, 1059, 1105, 1145, 1389
ApeKI GCWGC 4 cut(s) 643, 651, 654, 1178
ApoI RAATTY 2 cut(s) 501, 808
Asp700I GAANNNNTTC 1 cut(s) 700
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 5 cut(s) 93, 403, 664, 788, 1390
AsuHPI GGTGA 3 cut(s) 45, 455, 805
AsuII TTCGAA 2 cut(s) 184, 237
AvaII GGWCC 2 cut(s) 664, 788
AxyI CCTNAGG 1 cut(s) 1368
BalI TGGCCA 1 cut(s) 177
BarI GAAGNNNNNNTAC 4 cut(s) 511, 543, 1212, 1244
BbvI GCAGC 4 cut(s) 655, 663, 666, 1190
BccI CCATC 2 cut(s) 302, 1410
BceAI ACGGC 3 cut(s) 390, 642, 947
BciT130I CCWGG 1 cut(s) 1292
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 5 cut(s) 74, 309, 640, 714, 910
BfaI CTAG 6 cut(s) 152, 192, 548, 686, 1266, 1426
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 6 cut(s) 644, 652, 655, 1148, 1151, 1179
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 6 cut(s) 645, 653, 656, 1149, 1152, 1180
Bme1390I CCNGG 1 cut(s) 1292
Bme18I GGWCC 2 cut(s) 664, 788
BmgT120I GGNCC 5 cut(s) 93, 403, 664, 788, 1390
BmrFI CCNGG 1 cut(s) 1292
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 3 cut(s) 550, 1000, 1329
BmuI ACTGGG 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 1351, 1383
BpmI CTGGAG 3 cut(s) 56, 1076, 1313
Bpu1102I GCTNAGC 1 cut(s) 647
Bpu14I TTCGAA 2 cut(s) 184, 237
BsaBI GATNNNNATC 2 cut(s) 579, 1134
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 382, 1148
BsaWI WCCGGW 1 cut(s) 1243
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 907
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 5 cut(s) 73, 364, 728, 880, 1059
Bse21I CCTNAGG 1 cut(s) 1368
Bse8I GATNNNNATC 2 cut(s) 579, 1134
BseAI TCCGGA 1 cut(s) 1243
BseBI CCWGG 1 cut(s) 1292
BseDI CCNNGG 2 cut(s) 382, 1148
BseGI GGATG 3 cut(s) 313, 565, 776
BseJI GATNNNNATC 2 cut(s) 579, 1134
BseLI CCNNNNNNNGG 2 cut(s) 102, 907
BseMII CTCAG 7 cut(s) 321, 638, 798, 810, 1230, 1382, 1385
BseNI ACTGG 5 cut(s) 73, 364, 728, 880, 1059
BseRI GAGGAG 1 cut(s) 1400
BseXI GCAGC 4 cut(s) 655, 663, 666, 1190
BseYI CCCAGC 1 cut(s) 1181
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 960, 1150
BshFI GGCC 9 cut(s) 94, 177, 203, 381, 405, 1061, 1107, 1147, 1391
BsiSI CCGG 2 cut(s) 378, 1244
BsiWI CGTACG 2 cut(s) 97, 407
BslFI GGGAC 2 cut(s) 22, 209
BslI CCNNNNNNNGG 2 cut(s) 102, 907
BsmAI GTCTC 5 cut(s) 74, 309, 640, 714, 910
BsmBI CGTCTC 2 cut(s) 74, 309
BsmFI GGGAC 2 cut(s) 22, 209
BsmI GAATGC 2 cut(s) 498, 1282
BsnI GGCC 9 cut(s) 94, 177, 203, 381, 405, 1061, 1107, 1147, 1391
Bso31I GGTCTC 1 cut(s) 640
Bsp119I TTCGAA 2 cut(s) 184, 237
Bsp13I TCCGGA 1 cut(s) 1243
Bsp143I GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
Bsp1720I GCTNAGC 1 cut(s) 647
BspACI CCGC 5 cut(s) 534, 680, 958, 1148, 1150
BspANI GGCC 9 cut(s) 94, 177, 203, 381, 405, 1061, 1107, 1147, 1391
BspCNI CTCAG 7 cut(s) 322, 639, 797, 811, 1229, 1381, 1386
BspEI TCCGGA 1 cut(s) 1243
BspFNI CGCG 2 cut(s) 960, 1150
BspHI TCATGA 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 4 cut(s) 588, 619, 781, 1124
BspT104I TTCGAA 2 cut(s) 184, 237
BspTNI GGTCTC 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 5 cut(s) 73, 364, 728, 880, 1059
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 382, 1148
BssMI GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
BssNAI GTATAC 1 cut(s) 1021
Bst1107I GTATAC 1 cut(s) 1021
Bst2UI CCWGG 1 cut(s) 1292
Bst4CI ACNGT 4 cut(s) 102, 386, 869, 941
BstBI TTCGAA 2 cut(s) 184, 237
BstC8I GCNNGC 4 cut(s) 126, 379, 438, 1315
BstDEI CTNAG 7 cut(s) 330, 647, 784, 819, 1216, 1368, 1394
BstDSI CCRYGG 2 cut(s) 382, 1148
BstF5I GGATG 3 cut(s) 313, 565, 776
BstFNI CGCG 2 cut(s) 960, 1150
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 8 cut(s) 448, 567, 583, 614, 776, 884, 1132, 1209
BstMAI GTCTC 5 cut(s) 74, 309, 640, 714, 910
BstMBI GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
BstMWI GCNNNNNNNGC 3 cut(s) 931, 959, 1184
BstNI CCWGG 1 cut(s) 1292
BstSCI CCNGG 1 cut(s) 1290
BstUI CGCG 2 cut(s) 960, 1150
BstV1I GCAGC 4 cut(s) 655, 663, 666, 1190
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BstZ17I GTATAC 1 cut(s) 1021
Bsu36I CCTNAGG 1 cut(s) 1368
BsuRI GGCC 9 cut(s) 94, 177, 203, 381, 405, 1061, 1107, 1147, 1391
BtgI CCRYGG 2 cut(s) 382, 1148
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 3 cut(s) 313, 565, 776
BtsIMutI CAGTG 2 cut(s) 348, 1244
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 4 cut(s) 126, 379, 438, 1315
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 962
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 5 cut(s) 93, 403, 664, 788, 1390
Cfr42I CCGCGG 1 cut(s) 1151
CseI GACGC 2 cut(s) 335, 864
Csp6I GTAC 6 cut(s) 98, 408, 671, 741, 752, 1420
CviAII CATG 9 cut(s) 298, 449, 497, 531, 631, 668, 902, 1225, 1310
CviQI GTAC 6 cut(s) 98, 408, 671, 741, 752, 1420
DdeI CTNAG 7 cut(s) 330, 647, 784, 819, 1216, 1368, 1394
DpnI GATC 8 cut(s) 447, 566, 582, 613, 775, 883, 1131, 1208
DpnII GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
DraIII CACNNNGTG 1 cut(s) 737
EaeI YGGCCR 2 cut(s) 175, 379
Eco31I GGTCTC 1 cut(s) 640
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 664, 788
Eco57I CTGAAG 2 cut(s) 440, 1103
Eco81I CCTNAGG 1 cut(s) 1368
EcoO109I RGGNCCY 2 cut(s) 788, 1390
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 1290
EcoRV GATATC 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 74, 309
FaeI CATG 9 cut(s) 301, 452, 500, 534, 634, 671, 905, 1228, 1313
FaqI GGGAC 2 cut(s) 22, 209
FatI CATG 9 cut(s) 297, 448, 496, 530, 630, 667, 901, 1224, 1309
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 1020
Fnu4HI GCNGC 6 cut(s) 644, 652, 655, 1148, 1151, 1179
FokI GGATG 3 cut(s) 320, 572, 763
Fsp4HI GCNGC 6 cut(s) 644, 652, 655, 1148, 1151, 1179
FspBI CTAG 6 cut(s) 152, 192, 548, 686, 1266, 1426
GlaI GCGC 1 cut(s) 961
GluI GCNGC 6 cut(s) 644, 652, 655, 1148, 1151, 1179
GsaI CCCAGC 1 cut(s) 1185
GsuI CTGGAG 3 cut(s) 56, 1076, 1313
HaeIII GGCC 9 cut(s) 94, 177, 203, 381, 405, 1061, 1107, 1147, 1391
HapII CCGG 2 cut(s) 378, 1244
HgaI GACGC 2 cut(s) 335, 864
HhaI GCGC 1 cut(s) 962
Hin1II CATG 9 cut(s) 301, 452, 500, 534, 634, 671, 905, 1228, 1313
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HindIII AAGCTT 2 cut(s) 932, 993
HinfI GANTC 4 cut(s) 353, 782, 797, 945
HpaII CCGG 2 cut(s) 378, 1244
HphI GGTGA 3 cut(s) 45, 455, 805
Hpy166II GTNNAC 2 cut(s) 1021, 1096
Hpy188I TCNGA 8 cut(s) 87, 611, 781, 796, 820, 886, 1009, 1219
Hpy188III TCNNGA 7 cut(s) 44, 449, 705, 786, 981, 1244, 1346
Hpy8I GTNNAC 2 cut(s) 1021, 1096
Hpy99I CGWCG 2 cut(s) 329, 945
HpyAV CCTTC 3 cut(s) 250, 287, 801
HpyCH4III ACNGT 4 cut(s) 102, 386, 869, 941
HpyCH4IV ACGT 3 cut(s) 67, 318, 410
HpyCH4V TGCA 6 cut(s) 496, 524, 589, 1013, 1280, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 931, 959, 1184
HpyF3I CTNAG 7 cut(s) 330, 647, 784, 819, 1216, 1368, 1394
HpySE526I ACGT 3 cut(s) 67, 318, 410
Hsp92II CATG 9 cut(s) 301, 452, 500, 534, 634, 671, 905, 1228, 1313
HspAI GCGC 1 cut(s) 960
Kpn2I TCCGGA 1 cut(s) 1243
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 445
KspI CCGCGG 1 cut(s) 1151
Kzo9I GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
LmnI GCTCC 2 cut(s) 707, 1124
Lsp1109I GCAGC 4 cut(s) 655, 663, 666, 1190
LweI GCATC 3 cut(s) 550, 1000, 1329
MaeI CTAG 6 cut(s) 152, 192, 548, 686, 1266, 1426
MaeII ACGT 3 cut(s) 67, 318, 410
MaeIII GTNAC 5 cut(s) 215, 319, 392, 760, 1296
MalI GATC 8 cut(s) 447, 566, 582, 613, 775, 883, 1131, 1208
MboI GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
MboII GAAGA 4 cut(s) 18, 265, 493, 1216
MflI RGATCY 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 8 cut(s) 13, 34, 81, 114, 501, 808, 1125, 1398
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 3 cut(s) 347, 776, 791
MmeI TCCRAC 3 cut(s) 784, 804, 819
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 498
MroI TCCGGA 1 cut(s) 1243
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 700
MscI TGGCCA 1 cut(s) 177
MseI TTAA 3 cut(s) 359, 936, 1329
Msp20I TGGCCA 1 cut(s) 177
MspA1I CMGCKG 3 cut(s) 646, 1150, 1181
MspI CCGG 2 cut(s) 378, 1244
MspR9I CCNGG 1 cut(s) 1292
Mva1269I GAATGC 2 cut(s) 498, 1282
MvaI CCWGG 1 cut(s) 1292
MvnI CGCG 2 cut(s) 960, 1150
MwoI GCNNNNNNNGC 3 cut(s) 931, 959, 1184
NaeI GCCGGC 1 cut(s) 379
NdeII GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 9 cut(s) 301, 452, 500, 534, 634, 671, 905, 1228, 1313
NmuCI GTSAC 1 cut(s) 760
NsiI ATGCAT 1 cut(s) 498
NspV TTCGAA 2 cut(s) 184, 237
PagI TCATGA 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 431
PctI GAATGC 2 cut(s) 498, 1282
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 1 cut(s) 945
Pfl23II CGTACG 2 cut(s) 97, 407
PkrI GCNGC 6 cut(s) 645, 653, 656, 1149, 1152, 1180
PleI GAGTC 3 cut(s) 347, 776, 791
PpsI GAGTC 3 cut(s) 347, 776, 791
PpuMI RGGWCCY 1 cut(s) 788
PsiI TTATAA 2 cut(s) 1167, 1409
Psp5II RGGWCCY 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 1290
PspFI CCCAGC 1 cut(s) 1181
PspGI CCWGG 1 cut(s) 1290
PspLI CGTACG 2 cut(s) 97, 407
PspPI GGNCC 5 cut(s) 93, 403, 664, 788, 1390
PspPPI RGGWCCY 1 cut(s) 788
PsrI GAACNNNNNNTAC 2 cut(s) 400, 432
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 2 cut(s) 646, 1181
RsaI GTAC 6 cut(s) 99, 409, 672, 742, 753, 1421
RsaNI GTAC 6 cut(s) 98, 408, 671, 741, 752, 1420
SacII CCGCGG 1 cut(s) 1151
SaqAI TTAA 3 cut(s) 359, 936, 1329
SatI GCNGC 6 cut(s) 644, 652, 655, 1148, 1151, 1179
Sau3AI GATC 8 cut(s) 445, 564, 580, 611, 773, 881, 1129, 1206
Sau96I GGNCC 5 cut(s) 93, 403, 664, 788, 1390
SchI GAGTC 3 cut(s) 347, 776, 791
ScrFI CCNGG 1 cut(s) 1292
SfaNI GCATC 3 cut(s) 550, 1000, 1329
Sfr303I CCGCGG 1 cut(s) 1151
SfuI TTCGAA 2 cut(s) 184, 237
SgrBI CCGCGG 1 cut(s) 1151
SinI GGWCC 2 cut(s) 664, 788
Sse9I AATT 8 cut(s) 13, 34, 81, 114, 501, 808, 1125, 1398
SsiI CCGC 5 cut(s) 534, 680, 958, 1148, 1150
SspMI CTAG 6 cut(s) 152, 192, 548, 686, 1266, 1426
StyD4I CCNGG 1 cut(s) 1290
TaaI ACNGT 4 cut(s) 102, 386, 869, 941
TaiI ACGT 3 cut(s) 70, 321, 413
TaqI TCGA 3 cut(s) 184, 237, 943
TasI AATT 8 cut(s) 13, 34, 81, 114, 501, 808, 1125, 1398
TatI WGTACW 1 cut(s) 670
TauI GCSGC 2 cut(s) 1150, 1153
TfiI GAWTC 1 cut(s) 945
Tru1I TTAA 3 cut(s) 359, 936, 1329
Tru9I TTAA 3 cut(s) 359, 936, 1329
TscAI CASTG 2 cut(s) 355, 1244
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 643, 651, 654, 1178
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 5 cut(s) 18, 67, 306, 519, 1289
TspRI CASTG 2 cut(s) 355, 1244
VpaK11BI GGWCC 2 cut(s) 664, 788
XapI RAATTY 2 cut(s) 501, 808
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 1 cut(s) 700
XspI CTAG 6 cut(s) 152, 192, 548, 686, 1266, 1426
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.