transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 34, 78, 171 |
| AflIII | ACRYGT | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 44, 76 |
| AluBI | AGCT | 3 cut(s) | 171, 227, 307 |
| AluI | AGCT | 3 cut(s) | 171, 227, 307 |
| Alw21I | GWGCWC | 1 cut(s) | 229 |
| AlwI | GGATC | 3 cut(s) | 34, 78, 171 |
| Ama87I | CYCGRG | 1 cut(s) | 98 |
| AoxI | GGCC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 1 cut(s) | 292 |
| AvaI | CYCGRG | 1 cut(s) | 98 |
| BanII | GRGCYC | 1 cut(s) | 229 |
| Bbv12I | GWGCWC | 1 cut(s) | 229 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 207 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| BmeT110I | CYCGRG | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 1 cut(s) | 292 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmrI | ACTGGG | 2 cut(s) | 40, 299 |
| BmsI | GCATC | 1 cut(s) | 147 |
| BmuI | ACTGGG | 2 cut(s) | 40, 299 |
| BsaWI | WCCGGW | 1 cut(s) | 111 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| Bse1I | ACTGG | 3 cut(s) | 12, 35, 294 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseNI | ACTGG | 3 cut(s) | 12, 35, 294 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| BsgI | GTGCAG | 1 cut(s) | 173 |
| BshFI | GGCC | 1 cut(s) | 294 |
| BsiHKAI | GWGCWC | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 1 cut(s) | 98 |
| BsiSI | CCGG | 3 cut(s) | 112, 147, 295 |
| BsnI | GGCC | 1 cut(s) | 294 |
| BsoBI | CYCGRG | 1 cut(s) | 98 |
| Bsp1286I | GDGCHC | 1 cut(s) | 229 |
| Bsp143I | GATC | 3 cut(s) | 39, 70, 163 |
| BspANI | GGCC | 1 cut(s) | 294 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspPI | GGATC | 3 cut(s) | 34, 78, 171 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BsrI | ACTGG | 3 cut(s) | 12, 35, 294 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssMI | GATC | 3 cut(s) | 39, 70, 163 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 2 cut(s) | 148, 152 |
| BstKTI | GATC | 3 cut(s) | 42, 73, 166 |
| BstMBI | GATC | 3 cut(s) | 39, 70, 163 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BsuRI | GGCC | 1 cut(s) | 294 |
| Cac8I | GCNNGC | 2 cut(s) | 148, 152 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 1 cut(s) | 292 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviJI | RGCY | 7 cut(s) | 76, 171, 227, 280, 294, 307, 312 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 171, 227, 280, 294, 307, 312 |
| DpnI | GATC | 3 cut(s) | 41, 72, 165 |
| DpnII | GATC | 3 cut(s) | 39, 70, 163 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Ecl136II | GAGCTC | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 1 cut(s) | 229 |
| Eco53kI | GAGCTC | 1 cut(s) | 227 |
| Eco88I | CYCGRG | 1 cut(s) | 98 |
| EcoICRI | GAGCTC | 1 cut(s) | 227 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 1 cut(s) | 229 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 2 cut(s) | 175, 195 |
| FatI | CATG | 1 cut(s) | 193 |
| FriOI | GRGCYC | 1 cut(s) | 229 |
| FspBI | CTAG | 1 cut(s) | 207 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| HaeIII | GGCC | 1 cut(s) | 294 |
| HapII | CCGG | 3 cut(s) | 112, 147, 295 |
| Hin1II | CATG | 1 cut(s) | 197 |
| HinfI | GANTC | 1 cut(s) | 254 |
| HpaII | CCGG | 3 cut(s) | 112, 147, 295 |
| Hpy188I | TCNGA | 4 cut(s) | 70, 231, 259, 304 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| HpyCH4V | TGCA | 1 cut(s) | 154 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| KroI | GCCGGC | 1 cut(s) | 146 |
| KroNI | GCCGGC | 1 cut(s) | 148 |
| Kzo9I | GATC | 3 cut(s) | 39, 70, 163 |
| LmnI | GCTCC | 2 cut(s) | 224, 232 |
| LweI | GCATC | 1 cut(s) | 147 |
| MaeI | CTAG | 1 cut(s) | 207 |
| MalI | GATC | 3 cut(s) | 41, 72, 165 |
| MboI | GATC | 3 cut(s) | 39, 70, 163 |
| MboII | GAAGA | 4 cut(s) | 170, 226, 229, 295 |
| MhlI | GDGCHC | 1 cut(s) | 229 |
| MmeI | TCCRAC | 2 cut(s) | 48, 282 |
| MnlI | CCTC | 3 cut(s) | 19, 105, 154 |
| MroNI | GCCGGC | 1 cut(s) | 146 |
| MspI | CCGG | 3 cut(s) | 112, 147, 295 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| NaeI | GCCGGC | 1 cut(s) | 148 |
| NdeII | GATC | 3 cut(s) | 39, 70, 163 |
| NgoMIV | GCCGGC | 1 cut(s) | 146 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PaeR7I | CTCGAG | 1 cut(s) | 98 |
| PciI | ACATGT | 1 cut(s) | 193 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 255 |
| PdiI | GCCGGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 254 |
| PscI | ACATGT | 1 cut(s) | 193 |
| Psp124BI | GAGCTC | 1 cut(s) | 229 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PspPI | GGNCC | 1 cut(s) | 292 |
| SacI | GAGCTC | 1 cut(s) | 229 |
| Sau3AI | GATC | 3 cut(s) | 39, 70, 163 |
| Sau96I | GGNCC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SduI | GDGCHC | 1 cut(s) | 229 |
| SetI | ASST | 5 cut(s) | 84, 97, 173, 229, 309 |
| SfaNI | GCATC | 1 cut(s) | 147 |
| Sfr274I | CTCGAG | 1 cut(s) | 98 |
| SlaI | CTCGAG | 1 cut(s) | 98 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| SspMI | CTAG | 1 cut(s) | 207 |
| SstI | GAGCTC | 1 cut(s) | 229 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TfiI | GAWTC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 2 cut(s) | 94, 284 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XhoI | CTCGAG | 1 cut(s) | 98 |
| XspI | CTAG | 1 cut(s) | 207 |