Rroxscaffold_4G00305930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000212
Physical Location & Seq
Reverse (-)
26686284 .. 26689818
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305930.1

Sequence Viewer

Length: 201 bp
ATGAAAAAGTGGTCTGTTCAGAACTTCTTGATCCTGATCGCTGGCGCTTTCTGCAAAGGTACCTCTGAAAGAGTGCAAGAATTGCTCCTCAAAACCGTTCCCAGAAAGCTGATTCTGAAACTGCAGTTTTCTGCTTTGCAGCAACTGTTTTGCACAACGATTTCCGTGGACTTTCCTTGTAATTTCTGGCCAAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.56

Weight (kDa)

9.57

Isoelectric Point (pI)

22.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 188
AfaI GTAC 1 cut(s) 61
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 139
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 190
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 59
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 30, 36
BspANI GGCC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 30, 36
Bst4CI ACNGT 2 cut(s) 97, 147
BstAPI GCANNNNNTGC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 33, 39
BstMBI GATC 2 cut(s) 30, 36
BstMWI GCNNNNNNNGC 2 cut(s) 51, 82
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 2 cut(s) 109, 190
CviKI_1 RGCY 2 cut(s) 109, 190
CviQI GTAC 1 cut(s) 60
DpnI GATC 2 cut(s) 32, 38
DpnII GATC 2 cut(s) 30, 36
EaeI YGGCCR 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 190
HhaI GCGC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 21, 67, 117
Hpy188III TCNNGA 2 cut(s) 28, 34
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 97, 147
HpyCH4V TGCA 5 cut(s) 54, 76, 124, 139, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 82
HspAI GCGC 1 cut(s) 45
KpnI GGTACC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 30, 36
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 27, 47, 115, 172
Lsp1109I GCAGC 1 cut(s) 151
MalI GATC 2 cut(s) 32, 38
MboI GATC 2 cut(s) 30, 36
MlsI TGGCCA 1 cut(s) 190
MluCI AATT 2 cut(s) 80, 181
MluNI TGGCCA 1 cut(s) 190
MnlI CCTC 2 cut(s) 73, 98
Mox20I TGGCCA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 190
Msp20I TGGCCA 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 51, 82
NdeII GATC 2 cut(s) 30, 36
NlaIV GGNNCC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 30, 36
SetI ASST 3 cut(s) 61, 65, 111
SfcI CTRYAG 1 cut(s) 122
SgeI CNNG 7 cut(s) 40, 46, 54, 89, 114, 178, 189
Sse9I AATT 2 cut(s) 80, 181
TaaI ACNGT 2 cut(s) 97, 147
TasI AATT 2 cut(s) 80, 181
TfiI GAWTC 1 cut(s) 112
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.