transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF1218 | PF06749 | 63 - 156 | 1.7e-24 | Protein of unknown function (DUF1218) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 81, 183, 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 234 |
| AfaI | GTAC | 3 cut(s) | 377, 494, 541 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 378 |
| AflIII | ACRYGT | 1 cut(s) | 489 |
| AjnI | CCWGG | 1 cut(s) | 262 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 262, 294 |
| AluBI | AGCT | 4 cut(s) | 54, 278, 524, 546 |
| AluI | AGCT | 4 cut(s) | 54, 278, 524, 546 |
| Alw21I | GWGCWC | 1 cut(s) | 33 |
| Alw26I | GTCTC | 2 cut(s) | 82, 304 |
| Alw44I | GTGCAC | 1 cut(s) | 29 |
| Ama87I | CYCGRG | 1 cut(s) | 202 |
| ApaLI | GTGCAC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 521 |
| AspS9I | GGNCC | 2 cut(s) | 282, 469 |
| AsuC2I | CCSGG | 1 cut(s) | 380 |
| AsuHPI | GGTGA | 1 cut(s) | 490 |
| AvaI | CYCGRG | 1 cut(s) | 202 |
| AvaII | GGWCC | 2 cut(s) | 282, 469 |
| BaeGI | GKGCMC | 1 cut(s) | 33 |
| BbsI | GAAGAC | 1 cut(s) | 256 |
| Bbv12I | GWGCWC | 1 cut(s) | 33 |
| BbvI | GCAGC | 1 cut(s) | 533 |
| BccI | CCATC | 1 cut(s) | 553 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 10, 44 |
| BciT130I | CCWGG | 1 cut(s) | 264 |
| BcnI | CCSGG | 1 cut(s) | 380 |
| BcoDI | GTCTC | 2 cut(s) | 82, 304 |
| BisI | GCNGC | 3 cut(s) | 81, 184, 522 |
| BlsI | GCNGC | 3 cut(s) | 82, 185, 523 |
| Bme1390I | CCNGG | 2 cut(s) | 264, 380 |
| Bme18I | GGWCC | 2 cut(s) | 282, 469 |
| BmeT110I | CYCGRG | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 2 cut(s) | 282, 469 |
| BmrFI | CCNGG | 2 cut(s) | 264, 380 |
| BpiI | GAAGAC | 1 cut(s) | 256 |
| BpmI | CTGGAG | 1 cut(s) | 462 |
| Bpu10I | CCTNAGC | 1 cut(s) | 256 |
| BpuMI | CCSGG | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 3 cut(s) | 262, 379, 501 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 378 |
| Bse1I | ACTGG | 1 cut(s) | 172 |
| Bse3DI | GCAATG | 2 cut(s) | 75, 416 |
| BseBI | CCWGG | 1 cut(s) | 264 |
| BseDI | CCNNGG | 3 cut(s) | 262, 379, 501 |
| BseGI | GGATG | 3 cut(s) | 124, 390, 564 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 378 |
| BseMI | GCAATG | 2 cut(s) | 75, 416 |
| BseMII | CTCAG | 4 cut(s) | 64, 168, 410, 530 |
| BseNI | ACTGG | 1 cut(s) | 172 |
| BseSI | GKGCMC | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 533 |
| BseYI | CCCAGC | 1 cut(s) | 563 |
| BsiHKAI | GWGCWC | 1 cut(s) | 33 |
| BsiHKCI | CYCGRG | 1 cut(s) | 202 |
| BsiSI | CCGG | 1 cut(s) | 379 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 378 |
| BsmAI | GTCTC | 2 cut(s) | 82, 304 |
| BsmBI | CGTCTC | 1 cut(s) | 82 |
| BsoBI | CYCGRG | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 33 |
| BspACI | CCGC | 3 cut(s) | 81, 183, 267 |
| BspCNI | CTCAG | 4 cut(s) | 63, 167, 409, 529 |
| BsrDI | GCAATG | 2 cut(s) | 75, 416 |
| BsrI | ACTGG | 1 cut(s) | 172 |
| BssECI | CCNNGG | 3 cut(s) | 262, 379, 501 |
| BssT1I | CCWWGG | 1 cut(s) | 501 |
| Bst2UI | CCWGG | 1 cut(s) | 264 |
| Bst4CI | ACNGT | 1 cut(s) | 143 |
| BstDEI | CTNAG | 6 cut(s) | 50, 55, 154, 256, 396, 516 |
| BstF5I | GGATG | 3 cut(s) | 124, 390, 564 |
| BstMAI | GTCTC | 2 cut(s) | 82, 304 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 80, 530, 569 |
| BstNI | CCWGG | 1 cut(s) | 264 |
| BstNSI | RCATGY | 2 cut(s) | 241, 493 |
| BstSCI | CCNGG | 2 cut(s) | 262, 378 |
| BstSLI | GKGCMC | 1 cut(s) | 33 |
| BstV1I | GCAGC | 1 cut(s) | 533 |
| BstV2I | GAAGAC | 1 cut(s) | 256 |
| BtsCI | GGATG | 3 cut(s) | 124, 390, 564 |
| Cfr13I | GGNCC | 2 cut(s) | 282, 469 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 3 cut(s) | 376, 493, 540 |
| CviAII | CATG | 4 cut(s) | 220, 238, 333, 490 |
| CviJI | RGCY | 9 cut(s) | 18, 54, 62, 186, 260, 278, 524, 546, 563 |
| CviKI_1 | RGCY | 9 cut(s) | 18, 54, 62, 186, 260, 278, 524, 546, 563 |
| CviQI | GTAC | 3 cut(s) | 376, 493, 540 |
| DdeI | CTNAG | 6 cut(s) | 50, 55, 154, 256, 396, 516 |
| DraIII | CACNNNGTG | 1 cut(s) | 234 |
| EciI | GGCGGA | 1 cut(s) | 282 |
| Eco130I | CCWWGG | 1 cut(s) | 501 |
| Eco47I | GGWCC | 2 cut(s) | 282, 469 |
| Eco88I | CYCGRG | 1 cut(s) | 202 |
| EcoRII | CCWGG | 1 cut(s) | 262 |
| EcoT14I | CCWWGG | 1 cut(s) | 501 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| ErhI | CCWWGG | 1 cut(s) | 501 |
| Esp3I | CGTCTC | 1 cut(s) | 82 |
| FaeI | CATG | 4 cut(s) | 223, 241, 336, 493 |
| FatI | CATG | 4 cut(s) | 219, 237, 332, 489 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 184, 522 |
| FokI | GGATG | 3 cut(s) | 131, 397, 571 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 184, 522 |
| GluI | GCNGC | 3 cut(s) | 81, 184, 522 |
| GsaI | CCCAGC | 1 cut(s) | 567 |
| GsuI | CTGGAG | 1 cut(s) | 462 |
| HapII | CCGG | 1 cut(s) | 379 |
| HgaI | GACGC | 1 cut(s) | 422 |
| Hin1II | CATG | 4 cut(s) | 223, 241, 336, 493 |
| HinfI | GANTC | 3 cut(s) | 22, 209, 329 |
| HpaII | CCGG | 1 cut(s) | 379 |
| HphI | GGTGA | 1 cut(s) | 490 |
| Hpy166II | GTNNAC | 1 cut(s) | 31 |
| Hpy188I | TCNGA | 3 cut(s) | 157, 321, 399 |
| Hpy188III | TCNNGA | 2 cut(s) | 229, 556 |
| Hpy8I | GTNNAC | 1 cut(s) | 31 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyAV | CCTTC | 1 cut(s) | 44 |
| HpyCH4III | ACNGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 5 cut(s) | 31, 237, 326, 461, 572 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 80, 530, 569 |
| HpyF3I | CTNAG | 6 cut(s) | 50, 55, 154, 256, 396, 516 |
| Hsp92II | CATG | 4 cut(s) | 223, 241, 336, 493 |
| LmnI | GCTCC | 1 cut(s) | 443 |
| Lsp1109I | GCAGC | 1 cut(s) | 533 |
| MaeIII | GTNAC | 3 cut(s) | 226, 310, 410 |
| MboII | GAAGA | 3 cut(s) | 105, 188, 261 |
| MhlI | GDGCHC | 1 cut(s) | 33 |
| MlyI | GAGTC | 1 cut(s) | 16 |
| MnlI | CCTC | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MspI | CCGG | 1 cut(s) | 379 |
| MspR9I | CCNGG | 2 cut(s) | 264, 380 |
| MvaI | CCWGG | 1 cut(s) | 264 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 80, 530, 569 |
| NciI | CCSGG | 1 cut(s) | 380 |
| NlaIII | CATG | 4 cut(s) | 223, 241, 336, 493 |
| NmeAIII | GCCGAG | 1 cut(s) | 109 |
| NmuCI | GTSAC | 2 cut(s) | 226, 410 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 2 cut(s) | 241, 493 |
| PciI | ACATGT | 1 cut(s) | 489 |
| PfeI | GAWTC | 2 cut(s) | 209, 329 |
| PkrI | GCNGC | 3 cut(s) | 82, 185, 523 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| PscI | ACATGT | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 262 |
| PspFI | CCCAGC | 1 cut(s) | 563 |
| PspGI | CCWGG | 1 cut(s) | 262 |
| PspPI | GGNCC | 2 cut(s) | 282, 469 |
| RsaI | GTAC | 3 cut(s) | 377, 494, 541 |
| RsaNI | GTAC | 3 cut(s) | 376, 493, 540 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SatI | GCNGC | 3 cut(s) | 81, 184, 522 |
| Sau96I | GGNCC | 2 cut(s) | 282, 469 |
| SchI | GAGTC | 1 cut(s) | 16 |
| ScrFI | CCNGG | 2 cut(s) | 264, 380 |
| SduI | GDGCHC | 1 cut(s) | 33 |
| SetI | ASST | 5 cut(s) | 36, 56, 280, 526, 548 |
| SinI | GGWCC | 2 cut(s) | 282, 469 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SsiI | CCGC | 3 cut(s) | 81, 183, 267 |
| StyD4I | CCNGG | 2 cut(s) | 262, 378 |
| StyI | CCWWGG | 1 cut(s) | 501 |
| TaaI | ACNGT | 1 cut(s) | 143 |
| TaqI | TCGA | 2 cut(s) | 20, 274 |
| TatI | WGTACW | 1 cut(s) | 492 |
| TauI | GCSGC | 2 cut(s) | 83, 186 |
| TfiI | GAWTC | 2 cut(s) | 209, 329 |
| TseFI | GTSAC | 2 cut(s) | 226, 410 |
| TseI | GCWGC | 1 cut(s) | 521 |
| Tsp45I | GTSAC | 2 cut(s) | 226, 410 |
| TspDTI | ATGAA | 2 cut(s) | 135, 147 |
| VneI | GTGCAC | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 2 cut(s) | 282, 469 |
| XceI | RCATGY | 2 cut(s) | 241, 493 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |