AT3G23570

Dienelactone hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000177
Physical Location & Seq
Reverse (-)
8457767 .. 8459990
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23570.1

Sequence Viewer

Length: 720 bp
ATGTCAGGTCATCAGTGCACCGAGAACCCGCCTGATCTGGATCCAACTAGCGGGTCGGGTCATGTCGAGAAACTCGGTAACCTTGACACCTACGTCTGTGGTTCCACTCATTCAAAGCTTGCTGTTCTTCTTGTCCCTCATGTTTTCGGATATGAAACTCCAAACCTGAGGAAACTTGCTGACAAGGTTGCAGAAGCTGGATTCTACGCGGTGGTTCCTGATTTCTTCCATGGAGATCCTTATAATCCCGAGAACCAGGATCGTCCGTTTCCTATTTGGATGAAAGATCATGAACTAGAGAAAGGGTTTGAGGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATAACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCGGTGGAACTAGCTAAGGAAAAGCTTGTTGACGCTACTGTTTTGTTACATCCTGCTCGCGTTACGGTGGATGATATCAAGGAGGTCAACCTTCCAATTGCTGTATTAGGAGCTGAAATCGATCAAGTGTCTCCTCCAGAACTTGTGAGGCAGTTCGAAGATATTTTAGCTTCTAAACCTCAGGTGAAGAGTTTTGTGAAGATATTCCCAAGATGCAAACACGGTTGGACTGTTAGATACAATGAAAATGATCCATCAGAAGTTGAAGCTGCAATGGAAGCTCACAAGGACATGCTCGCTTGGCTCATCGACTATCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

239

Amino Acids

26.53

Weight (kDa)

5.28

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 28 - 237 2.1e-30 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 1 cut(s) 92
AccII CGCG 2 cut(s) 209, 456
AciI CCGC 4 cut(s) 29, 51, 209, 398
AclWI GGATC 5 cut(s) 35, 48, 230, 267, 641
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 114, 340, 662
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 8 cut(s) 118, 197, 410, 421, 509, 566, 665, 677
AluI AGCT 8 cut(s) 118, 197, 410, 421, 509, 566, 665, 677
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 531
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 5 cut(s) 35, 48, 230, 267, 641
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 368, 665
Asp700I GAANNNNTTC 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 592
AsuII TTCGAA 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 248
AxyI CCTNAGG 2 cut(s) 167, 576
BaeGI GKGCMC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 380, 652
BccI CCATC 1 cut(s) 658
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 531
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 4 cut(s) 48, 296, 357, 407
BisI GCNGC 2 cut(s) 369, 666
BlsI GCNGC 2 cut(s) 370, 667
Bme1390I CCNGG 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 42, 103, 216
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 698
Bsa29I ATCGAT 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse21I CCTNAGG 2 cut(s) 167, 576
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 3 cut(s) 285, 445, 472
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 2 cut(s) 158, 590
BseRI GAGGAG 2 cut(s) 326, 519
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 2 cut(s) 380, 652
Bsh1236I CGCG 2 cut(s) 209, 456
BshFI GGCC 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 4 cut(s) 29, 51, 209, 398
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 159, 589
BspDI ATCGAT 1 cut(s) 516
BspFNI CGCG 2 cut(s) 209, 456
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 42, 103, 216
BspPI GGATC 5 cut(s) 35, 48, 230, 267, 641
BspT104I TTCGAA 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 4 cut(s) 436, 463, 620, 628
Bst6I CTCTTC 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 120, 454, 693
BstDEI CTNAG 3 cut(s) 167, 411, 576
BstDSI CCRYGG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 77
BstF5I GGATG 3 cut(s) 285, 445, 472
BstFNI CGCG 2 cut(s) 209, 456
BstKTI GATC 7 cut(s) 37, 43, 238, 262, 289, 520, 649
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
BstMWI GCNNNNNNNGC 3 cut(s) 395, 674, 697
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 691
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 2 cut(s) 209, 456
BstV1I GCAGC 2 cut(s) 380, 652
BstX2I RGATCY 2 cut(s) 40, 235
BstYI RGATCY 2 cut(s) 40, 235
Bsu15I ATCGAT 1 cut(s) 516
Bsu36I CCTNAGG 2 cut(s) 167, 576
BsuRI GGCC 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 3 cut(s) 285, 445, 472
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 3 cut(s) 120, 454, 693
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 516
CseI GACGC 1 cut(s) 437
CviAII CATG 5 cut(s) 62, 140, 230, 290, 688
DdeI CTNAG 3 cut(s) 167, 411, 576
DpnI GATC 7 cut(s) 36, 42, 237, 261, 288, 519, 648
DpnII GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 335
Eco32I GATATC 1 cut(s) 472
Eco81I CCTNAGG 2 cut(s) 167, 576
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 5 cut(s) 65, 143, 233, 293, 691
FaiI YATR 9 cut(s) 63, 141, 153, 231, 243, 291, 353, 362, 689
FaqI GGGAC 1 cut(s) 119
FatI CATG 5 cut(s) 61, 139, 229, 289, 687
FauI CCCGC 2 cut(s) 36, 44
Fnu4HI GCNGC 2 cut(s) 369, 666
FokI GGATG 3 cut(s) 292, 432, 479
Fsp4HI GCNGC 2 cut(s) 369, 666
FspBI CTAG 4 cut(s) 48, 296, 357, 407
GluI GCNGC 2 cut(s) 369, 666
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 1 cut(s) 437
Hin1II CATG 5 cut(s) 65, 143, 233, 293, 691
HincII GTYRAC 2 cut(s) 427, 484
HindII GTYRAC 2 cut(s) 427, 484
HindIII AAGCTT 2 cut(s) 116, 419
HinfI GANTC 2 cut(s) 201, 314
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 3 cut(s) 18, 427, 484
Hpy188I TCNGA 2 cut(s) 149, 655
Hpy188III TCNNGA 6 cut(s) 38, 67, 218, 248, 290, 533
Hpy8I GTNNAC 3 cut(s) 18, 427, 484
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 4 cut(s) 436, 463, 620, 628
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 18, 191, 389, 612, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 674, 697
HpyF3I CTNAG 3 cut(s) 167, 411, 576
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 5 cut(s) 65, 143, 233, 293, 691
Kzo9I GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
LmnI GCTCC 2 cut(s) 365, 506
Lsp1109I GCAGC 2 cut(s) 380, 652
LweI GCATC 1 cut(s) 599
MaeI CTAG 4 cut(s) 48, 296, 357, 407
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 77, 441, 457
MalI GATC 7 cut(s) 36, 42, 237, 261, 288, 519, 648
MboI GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
MboII GAAGA 6 cut(s) 119, 217, 352, 566, 595, 607
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 40, 235
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 492
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 68, 602
MnlI CCTC 8 cut(s) 147, 162, 304, 325, 472, 537, 540, 585
MroXI GAANNNNTTC 1 cut(s) 599
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 2 cut(s) 209, 456
MwoI GCNNNNNNNGC 3 cut(s) 395, 674, 697
NcoI CCATGG 1 cut(s) 229
NdeII GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
NlaIII CATG 5 cut(s) 65, 143, 233, 293, 691
NlaIV GGNNCC 3 cut(s) 42, 103, 216
NspI RCATGY 1 cut(s) 691
NspV TTCGAA 1 cut(s) 552
PagI TCATGA 1 cut(s) 289
PceI AGGCCT 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 370, 667
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 42, 103, 216
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 40, 235
SatI GCNGC 2 cut(s) 369, 666
Sau3AI GATC 7 cut(s) 34, 40, 235, 259, 286, 517, 646
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 1 cut(s) 599
SfuI TTCGAA 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 1 cut(s) 492
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 4 cut(s) 29, 51, 209, 398
SspMI CTAG 4 cut(s) 48, 296, 357, 407
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 4 cut(s) 436, 463, 620, 628
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 66, 516, 552, 705
TasI AATT 1 cut(s) 492
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 1 cut(s) 20
TseI GCWGC 2 cut(s) 368, 665
TspDTI ATGAA 4 cut(s) 168, 296, 306, 654
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 16
XceI RCATGY 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 4 cut(s) 48, 296, 357, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.