RLG00000007849

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000177
Physical Location & Seq
Reverse (-)
21942931 .. 21944694
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007849

Sequence Viewer

Length: 582 bp
ATGGCGCCTGGCCTTCTTTTTTGGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTCCAGCTGATGGATCCCCTGGCGGTCTACCTACATGGCTGAAAGGTCATGGACCGGAGAAGGGATTTGAAGATGTTAAACTAGTTATTGGAGCTCTAAAAAGTAAAGGCGTCTCTGCAATCGGTGCTGCAGGCTTCTCTTTGGGAGCCAAGGTTGTAGTTGAACTTGCAAGGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCATCTTTATTCACTGTGGATGATATCAAGGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCAGATGTCTCCGCCTGAAGTTGTGAAACAATTTGAAGAGGCTTTGGCTGCAAAGTCTGAGATCAAAAGTCATGTGAAGATATTCCCAAAAGTGTCGCATGGATGGACTGTGAGGTATGATGTTTCAGACAAAGAAGCTGTGAAGGCCGCTGAGGAGGCTCATAAAGATTTGTTGGAGTGGTTTGTGAACCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

194

Amino Acids

20.73

Weight (kDa)

6.3

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 9 - 190 1.1e-21 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 130
AciI CCGC 3 cut(s) 126, 392, 528
AclWI GGATC 2 cut(s) 111, 124
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 2 cut(s) 5, 213
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 113, 164
AgsI TTSAA 3 cut(s) 173, 266, 416
AhlI ACTAGT 1 cut(s) 184
AjnI CCWGG 2 cut(s) 7, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 7 cut(s) 31, 50, 110, 197, 293, 371, 518
AluI AGCT 7 cut(s) 31, 50, 110, 197, 293, 371, 518
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 3 cut(s) 84, 220, 393
AlwI GGATC 2 cut(s) 111, 124
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 2 cut(s) 10, 525
ApeKI GCWGC 5 cut(s) 47, 50, 230, 293, 428
Asp700I GAANNNNTTC 1 cut(s) 461
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 70, 155
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 70, 155
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 5 cut(s) 37, 59, 217, 280, 415
BccI CCATC 3 cut(s) 107, 319, 477
BciT130I CCWGG 2 cut(s) 9, 123
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 84, 220, 393
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 6 cut(s) 48, 51, 231, 294, 429, 528
BlsI GCNGC 6 cut(s) 49, 52, 232, 295, 430, 529
Bme1390I CCNGG 2 cut(s) 9, 123
Bme18I GGWCC 2 cut(s) 70, 155
BmgT120I GGNCC 2 cut(s) 70, 155
BmiI GGNNCC 5 cut(s) 6, 72, 118, 250, 351
BmrFI CCNGG 2 cut(s) 9, 123
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 531
BsaHI GRCGYC 2 cut(s) 5, 213
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 121, 252
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 164
BseBI CCWGG 2 cut(s) 9, 123
BseDI CCNNGG 2 cut(s) 121, 252
BseGI GGATG 3 cut(s) 307, 334, 488
BseLI CCNNNNNNNGG 2 cut(s) 113, 164
BseMII CTCAG 3 cut(s) 363, 429, 522
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 5 cut(s) 37, 59, 217, 280, 415
BshFI GGCC 2 cut(s) 12, 527
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 113, 164
BsmAI GTCTC 3 cut(s) 84, 220, 393
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 12, 527
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 116, 379, 441
BspACI CCGC 3 cut(s) 126, 392, 528
BspANI GGCC 2 cut(s) 12, 527
BspCNI CTCAG 3 cut(s) 364, 430, 523
BspLI GGNNCC 5 cut(s) 6, 72, 118, 250, 351
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 111, 124
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 121, 252
BssMI GATC 3 cut(s) 116, 379, 441
BssNI GRCGYC 2 cut(s) 5, 213
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 9, 123
Bst4CI ACNGT 2 cut(s) 325, 490
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 5, 213
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 33, 55, 235
BstDEI CTNAG 3 cut(s) 372, 438, 531
BstF5I GGATG 3 cut(s) 307, 334, 488
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 119, 382, 444
BstMAI GTCTC 3 cut(s) 84, 220, 393
BstMBI GATC 3 cut(s) 116, 379, 441
BstMWI GCNNNNNNNGC 5 cut(s) 227, 302, 428, 524, 536
BstNI CCWGG 2 cut(s) 9, 123
BstSCI CCNGG 2 cut(s) 7, 121
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 37, 59, 217, 280, 415
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 12, 527
BtsCI GGATG 3 cut(s) 307, 334, 488
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 33, 55, 235
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 70, 155
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 101
CviAII CATG 5 cut(s) 138, 152, 452, 479, 572
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 372, 438, 531
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 118, 381, 443
DpnII GATC 3 cut(s) 116, 379, 441
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 70, 155
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 7, 121
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 199
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 5 cut(s) 141, 155, 455, 482, 575
FaqI GGGAC 1 cut(s) 56
FatI CATG 5 cut(s) 137, 151, 451, 478, 571
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 48, 51, 231, 294, 429, 528
FokI GGATG 3 cut(s) 294, 341, 495
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 48, 51, 231, 294, 429, 528
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 48, 51, 231, 294, 429, 528
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 12, 527
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 213
Hin1II CATG 5 cut(s) 141, 155, 455, 482, 575
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 131, 568
Hpy188I TCNGA 3 cut(s) 384, 439, 508
Hpy8I GTNNAC 2 cut(s) 131, 568
HpyAV CCTTC 3 cut(s) 23, 157, 517
HpyCH4III ACNGT 2 cut(s) 325, 490
HpyCH4V TGCA 5 cut(s) 47, 221, 233, 272, 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 302, 428, 524, 536
HpyF3I CTNAG 3 cut(s) 372, 438, 531
Hsp92I GRCGYC 2 cut(s) 5, 213
Hsp92II CATG 5 cut(s) 141, 155, 455, 482, 575
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 116, 379, 441
LmnI GCTCC 3 cut(s) 194, 248, 368
Lsp1109I GCAGC 5 cut(s) 37, 59, 217, 280, 415
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 278
MalI GATC 3 cut(s) 118, 381, 443
MboI GATC 3 cut(s) 116, 379, 441
MboII GAAGA 3 cut(s) 185, 428, 469
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 410
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 6 cut(s) 18, 114, 412, 486, 526, 529
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 2 cut(s) 180, 345
MspA1I CMGCKG 3 cut(s) 50, 110, 530
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 9, 123
MvaI CCWGG 2 cut(s) 9, 123
MwoI GCNNNNNNNGC 5 cut(s) 227, 302, 428, 524, 536
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 116, 379, 441
NlaIII CATG 5 cut(s) 141, 155, 455, 482, 575
NlaIV GGNNCC 5 cut(s) 6, 72, 118, 250, 351
NmuCI GTSAC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 6 cut(s) 49, 52, 232, 295, 430, 529
PluTI GGCGCC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 7, 121
PspGI CCWGG 2 cut(s) 7, 121
PspN4I GGNNCC 5 cut(s) 6, 72, 118, 250, 351
PspPI GGNCC 2 cut(s) 70, 155
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 50, 110
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 180, 345
SatI GCNGC 6 cut(s) 48, 51, 231, 294, 429, 528
Sau3AI GATC 3 cut(s) 116, 379, 441
Sau96I GGNCC 2 cut(s) 70, 155
ScrFI CCNGG 2 cut(s) 9, 123
SduI GDGCHC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 231
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 70, 155
SpeI ACTAGT 1 cut(s) 184
Sse9I AATT 1 cut(s) 410
SsiI CCGC 3 cut(s) 126, 392, 528
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 185
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 7, 121
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 325, 490
TasI AATT 1 cut(s) 410
TauI GCSGC 1 cut(s) 530
Tru1I TTAA 2 cut(s) 180, 345
Tru9I TTAA 2 cut(s) 180, 345
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 5 cut(s) 47, 50, 230, 293, 428
Tsp45I GTSAC 1 cut(s) 278
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 70, 155
XmiI GTMKAC 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.