RchiOBHm_Chr4g0421371

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Forward (+)
47029581 .. 47032456
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39102

Sequence Viewer

Length: 273 bp
ATGTTGATTTGCCTTGCAGGGTATGATGCCCCAAACTTGAGGAAGCTTGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCTTTATGTACCTACAGCTAATGGATCCTCGAACTCTCTACCTACTTGGCTAAAAGGACATAGACCGTTTCAGATACTTACTAGGACTCTCATGTTGGGCTGTTTGAAGTTAATGTTTGTGGATTTGGAAAGACAAACTCCTAGACTGGTGTCTTGCACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

8.96

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 126, 139
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 3 cut(s) 46, 65, 125
AluI AGCT 3 cut(s) 46, 65, 125
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 126, 139
AlwNI CAGNNNCTG 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 62, 65
AspS9I GGNCC 1 cut(s) 85
AvaII GGWCC 1 cut(s) 85
BamHI GGATCC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 52, 74
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 2 cut(s) 189, 249
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 133
BmsI GCATC 1 cut(s) 16
BoxI GACNNNNGTC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 52, 74
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 87, 133
BspPI GGATC 2 cut(s) 126, 139
BspTNI GGTCTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 258
BssMI GATC 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 48, 70
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 52, 74
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 48, 70
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 199, 270
CviJI RGCY 6 cut(s) 46, 65, 72, 125, 157, 207
CviKI_1 RGCY 6 cut(s) 46, 65, 72, 125, 157, 207
CviQI GTAC 1 cut(s) 116
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 85
FaeI CATG 2 cut(s) 202, 273
FaiI YATR 6 cut(s) 24, 102, 114, 168, 200, 271
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 198, 269
Fnu4HI GCNGC 2 cut(s) 63, 66
Fsp4HI GCNGC 2 cut(s) 63, 66
FspBI CTAG 2 cut(s) 189, 249
GluI GCNGC 2 cut(s) 63, 66
Hin1II CATG 2 cut(s) 202, 273
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 17, 50, 62, 264
Hsp92II CATG 2 cut(s) 202, 273
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 3, 54, 102, 239
Lsp1109I GCAGC 2 cut(s) 52, 74
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 189, 249
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MflI RGATCY 1 cut(s) 131
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 33, 145
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 65
NdeII GATC 1 cut(s) 131
NlaIII CATG 2 cut(s) 202, 273
NlaIV GGNNCC 2 cut(s) 87, 133
PkrI GCNGC 2 cut(s) 64, 67
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 87, 133
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 63, 66
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 187
SetI ASST 6 cut(s) 48, 67, 111, 121, 127, 151
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SspMI CTAG 2 cut(s) 189, 249
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 137
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 2 cut(s) 62, 65
VpaK11BI GGWCC 1 cut(s) 85
XspI CTAG 2 cut(s) 189, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.