Rroxscaffold_7G00175940

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000177
Physical Location & Seq
Forward (+)
15422887 .. 15425491
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175940.1

Sequence Viewer

Length: 558 bp
ATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCATCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACATCTATGGATTTGAAGCACCAAACTTAAGGCAAAGTAGTTGTGGAGCTATCAAAGGGGTATTTACACTAAGGCTGCAGTTTTGTTACACCCTTACAATGTCACTCTTGATGATATTAAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACCTCACACCACCTGAACTCATGAAACAGTTTAAGGAGGCTTTATCCACTAATAAGGTTGACAACGTTGTGAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTTAGGTATCAAGATAACAATGTGACGGCTGTCAAAAGTGCTAACGAAGCTCATCAAGATATGTTGGACTGGTTTACCAAGTATGTTCAAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

185

Amino Acids

20.35

Weight (kDa)

9.08

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 105 - 181 1.4e-11 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 420
AclWI GGATC 1 cut(s) 127
AfaI GTAC 1 cut(s) 24
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 3 cut(s) 145, 215, 548
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 4 cut(s) 116, 178, 248, 509
AluI AGCT 4 cut(s) 116, 178, 248, 509
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 160
ApeKI GCWGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 68, 161
AvaII GGWCC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 109
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 17, 447
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 68
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 68, 161
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 163, 533
Bse21I CCTNAGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 85, 458
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 163, 533
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 2 cut(s) 149, 162
BsnI GGCC 2 cut(s) 149, 162
Bsp143I GATC 1 cut(s) 119
BspANI GGCC 2 cut(s) 149, 162
BspCNI CTCAG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 226
BsrI ACTGG 2 cut(s) 163, 533
BssMI GATC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 384, 460
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 109, 269
BstF5I GGATG 2 cut(s) 85, 458
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 149, 162
BtsCI GGATG 2 cut(s) 85, 458
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 116
CciI TCATGA 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 68, 161
Csp6I GTAC 1 cut(s) 23
CviAII CATG 3 cut(s) 20, 376, 449
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 109, 269
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 436
FaeI CATG 3 cut(s) 23, 379, 452
FaiI YATR 9 cut(s) 21, 153, 185, 207, 335, 377, 450, 521, 543
FatI CATG 3 cut(s) 19, 375, 448
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 2 cut(s) 72, 465
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 149, 162
Hin1II CATG 3 cut(s) 23, 379, 452
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 6, 415, 534
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 111, 307, 376, 470, 515
Hpy8I GTNNAC 3 cut(s) 6, 415, 534
HpyAV CCTTC 2 cut(s) 139, 174
HpyCH4III ACNGT 2 cut(s) 384, 460
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 46, 52, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 109, 269
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 3 cut(s) 23, 379, 452
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 82, 113, 245
LpnPI CCDG 8 cut(s) 51, 96, 102, 144, 381, 423, 450, 514
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 5 cut(s) 31, 154, 284, 300, 481
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MluCI AATT 1 cut(s) 347
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 2 cut(s) 115, 504
MnlI CCTC 6 cut(s) 81, 118, 131, 200, 368, 385
MseI TTAA 5 cut(s) 99, 129, 227, 317, 387
MspCI CTTAAG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 506
NdeII GATC 1 cut(s) 119
NlaIII CATG 3 cut(s) 23, 379, 452
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 3 cut(s) 31, 300, 481
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 375
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 19
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 488
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 68, 161
PstI CTGCAG 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 99, 129, 227, 317, 387
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 2 cut(s) 68, 161
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 438
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 347
SseBI AGGCCT 1 cut(s) 149
SspI AATATT 1 cut(s) 432
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 384, 460
TaiI ACGT 1 cut(s) 423
TasI AATT 1 cut(s) 347
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 5 cut(s) 99, 129, 227, 317, 387
Tru9I TTAA 5 cut(s) 99, 129, 227, 317, 387
TseFI GTSAC 3 cut(s) 31, 300, 481
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 3 cut(s) 31, 300, 481
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.