RchiOBHm_Chr4g0418651

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Reverse (-)
44095976 .. 44097396
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38863

Sequence Viewer

Length: 468 bp
ATGCCAGGCCCTCAGTGCTGCTCGAACCCACCGACCCTGAACCCAACCAGTGGATTCGGCCACGTTGAGAAGCTTGGTGGTCTCGACTCCTATCTCACTGGCTCTCCTAACTCCAAGCTTGCCATTGTTCTTGTCTCCGACATTTATGGTACGCACGGCACCCACCACTTCAAAGTGACAAAATCTAATCTTTTTCCATTTGGTTCAGTACTCTGCTTTTGTTCACTATCTTATTTGGGTTATGTTGCTTATAGTGAAATTGATGGTCTTTGTGTGCTTTTGCCTCTCTGGTTTGGTGGGTTGCTCTGTAGGTATGAGGCTCCAAACTTGAGGAAGCTCGAAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTAACTTCTTTTATGGAGACCCTTATGTACCTCCAGCTGATGGATCCCATGGCGGTCTACCTACATGGCTGAAAGGTCATGGACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

155

Amino Acids

16.61

Weight (kDa)

6.56

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 50, 419
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 432
AclWI GGATC 2 cut(s) 417, 430
AcoI YGGCCR 1 cut(s) 58
AfaI GTAC 3 cut(s) 151, 210, 408
AfiI CCNNNNNNNGG 2 cut(s) 50, 419
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 5 cut(s) 73, 118, 337, 356, 416
AluI AGCT 5 cut(s) 73, 118, 337, 356, 416
Alw26I GTCTC 3 cut(s) 86, 139, 390
AlwI GGATC 2 cut(s) 417, 430
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 3 cut(s) 18, 353, 356
AspS9I GGNCC 3 cut(s) 8, 376, 461
AvaII GGWCC 2 cut(s) 376, 461
BamHI GGATCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 5, 343, 365
BccI CCATC 2 cut(s) 257, 413
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 6
BcoDI GTCTC 3 cut(s) 86, 139, 390
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 19, 354, 357
BlsI GCNGC 3 cut(s) 20, 355, 358
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 376, 461
BmgT120I GGNCC 3 cut(s) 8, 376, 461
BmiI GGNNCC 4 cut(s) 160, 321, 378, 424
BmrFI CCNGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 349
BsaI GGTCTC 2 cut(s) 86, 390
BsaJI CCNNGG 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 419
Bse1I ACTGG 2 cut(s) 48, 103
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 50, 419
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 48, 103
BseXI GCAGC 3 cut(s) 5, 343, 365
BshFI GGCC 2 cut(s) 9, 60
BshNI GGYRCC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 50, 419
BsmAI GTCTC 3 cut(s) 86, 139, 390
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 9, 60
Bso31I GGTCTC 2 cut(s) 86, 390
Bsp143I GATC 1 cut(s) 422
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 432
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 160, 321, 378, 424
BspPI GGATC 2 cut(s) 417, 430
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 2 cut(s) 86, 390
BsrI ACTGG 2 cut(s) 48, 103
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 120, 361
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 427
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 3 cut(s) 86, 139, 390
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 5, 343, 365
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 2 cut(s) 9, 60
BtgI CCRYGG 1 cut(s) 427
BtsIMutI CAGTG 3 cut(s) 20, 55, 96
Cac8I GCNNGC 2 cut(s) 120, 361
CaiI CAGNNNCTG 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 8, 376, 461
Csp6I GTAC 3 cut(s) 150, 209, 407
CviAII CATG 3 cut(s) 428, 444, 458
CviQI GTAC 3 cut(s) 150, 209, 407
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 427
Eco31I GGTCTC 2 cut(s) 86, 390
Eco47I GGWCC 2 cut(s) 376, 461
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 3 cut(s) 431, 447, 461
FaiI YATR 9 cut(s) 147, 243, 252, 315, 393, 405, 429, 445, 459
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 427, 443, 457
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 19, 354, 357
Fsp4HI GCNGC 3 cut(s) 19, 354, 357
GluI GCNGC 3 cut(s) 19, 354, 357
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 9, 60
Hin1II CATG 3 cut(s) 431, 447, 461
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 2 cut(s) 54, 86
Hpy166II GTNNAC 2 cut(s) 224, 437
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 224, 437
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 431, 447, 461
Kzo9I GATC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 18, 50, 61, 84, 274, 345, 426
Lsp1109I GCAGC 3 cut(s) 5, 343, 365
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 1 cut(s) 353
MflI RGATCY 1 cut(s) 422
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 21, 294, 310, 324, 420
MspA1I CMGCKG 2 cut(s) 356, 416
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 15
NcoI CCATGG 1 cut(s) 427
NdeII GATC 1 cut(s) 422
NlaIII CATG 3 cut(s) 431, 447, 461
NlaIV GGNNCC 4 cut(s) 160, 321, 378, 424
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 54
PflMI CCANNNNNTGG 2 cut(s) 50, 419
PkrI GCNGC 3 cut(s) 20, 355, 358
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 4 cut(s) 160, 321, 378, 424
PspPI GGNCC 3 cut(s) 8, 376, 461
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 2 cut(s) 356, 416
RsaI GTAC 3 cut(s) 151, 210, 408
RsaNI GTAC 3 cut(s) 150, 209, 407
SatI GCNGC 3 cut(s) 19, 354, 357
Sau3AI GATC 1 cut(s) 422
Sau96I GGNCC 3 cut(s) 8, 376, 461
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 376, 461
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 23, 84, 339
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 54
TscAI CASTG 3 cut(s) 20, 55, 103
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 18, 353, 356
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 3 cut(s) 20, 55, 103
Van91I CCANNNNNTGG 2 cut(s) 50, 419
VpaK11BI GGWCC 2 cut(s) 376, 461
XmiI GTMKAC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.