Prupe.1G149400_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000177
Physical Location & Seq
Reverse (-)
11710974 .. 11713998
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G149400.1

Sequence Viewer

Length: 732 bp
ATGTCAGGACCTCAGTGCTGCTCACACCCACCAGTCCTCAACCCATCCAGTGGCTCCGGCCATGTTGAGAAGTTTGGTGGTCTCGACTCATATGTCACAGGCTCCCCTCACTCCAAGCTTGCCATTCTTTTCCTCTCTGACATTTTTGGATTTCAAGCTCCAAAATTAAGGAAGTTTGCAGACAAAGTTGCAGCTGCTGGGTACTTCGTTGTGGTCCCTGACTTCTTCTATGGAGATCCTTTTGTACTCGCAGATGATGGCTCCTTTGACCGTCTACCTGTTTGGTTAAAAGATCATAGTCCGGAGAAGGGATTTGAAGATGCAAAGCTAGTAATTGAAGCTTTAAAAAGTAAAGGCGTCTCTGCAATTGGTGCTGCAGGCTTCTGCTGGGGAGCCAAGGTTGCGGTTGAACTTGGAAAGCATGACCACGACTTCATCCATGCTGGTGTTCTGTTACATCCTGCATTTACCACTGTGGATGATATCAAAGAGGTTAAGGTTCCCATTGCCATACTTGGAGCTGAGTTTGACCACATTACTCCACCTGAAGTCTTGAAGCAGTGGGAAGAGGTTTTAATTGCAAAAACTGAGATAAAAAGCTACGTGAAAATATTTCCAGAAGTGGAACATGGATGGACGACGAGGTACAATGTGGAAGACGAAAAATCTGTTAAGTCTGCTGAGGAGGCTCATCAAGACTTGTTGGAGTGGTTCTCAAACCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

244

Amino Acids

26.76

Weight (kDa)

5.51

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 50
AccI GTMKAC 1 cut(s) 274
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 3 cut(s) 203, 246, 647
AfiI CCNNNNNNNGG 2 cut(s) 50, 308
AgsI TTSAA 5 cut(s) 155, 317, 338, 410, 556
AluBI AGCT 7 cut(s) 118, 158, 194, 328, 341, 521, 600
AluI AGCT 7 cut(s) 118, 158, 194, 328, 341, 521, 600
Alw26I GTCTC 2 cut(s) 86, 364
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 4 cut(s) 18, 191, 194, 374
AspS9I GGNCC 2 cut(s) 8, 214
AvaII GGWCC 2 cut(s) 8, 214
BbsI GAAGAC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 4 cut(s) 5, 181, 203, 361
BccI CCATC 3 cut(s) 52, 251, 627
BcoDI GTCTC 2 cut(s) 86, 364
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 4 cut(s) 19, 192, 195, 375
BlsI GCNGC 4 cut(s) 20, 193, 196, 376
Bme18I GGWCC 2 cut(s) 8, 214
BmgT120I GGNCC 2 cut(s) 8, 214
BmiI GGNNCC 6 cut(s) 55, 103, 216, 262, 394, 501
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 698, 730
Bpu10I CCTNAGC 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 308
Bse1I ACTGG 2 cut(s) 32, 48
Bse3DI GCAATG 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 5 cut(s) 44, 435, 457, 484, 638
BseLI CCNNNNNNNGG 2 cut(s) 50, 308
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 4 cut(s) 26, 513, 579, 672
BseNI ACTGG 2 cut(s) 32, 48
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 4 cut(s) 5, 181, 203, 361
BseYI CCCAGC 2 cut(s) 197, 387
BshFI GGCC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 57, 302
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 50, 308
BsmAI GTCTC 2 cut(s) 86, 364
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 2 cut(s) 235, 292
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 4 cut(s) 25, 514, 580, 673
BspEI TCCGGA 1 cut(s) 301
BspLI GGNNCC 6 cut(s) 55, 103, 216, 262, 394, 501
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 2 cut(s) 32, 48
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 235, 292
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 272, 475
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 120, 379
BstDEI CTNAG 4 cut(s) 12, 522, 588, 681
BstF5I GGATG 5 cut(s) 44, 435, 457, 484, 638
BstKTI GATC 2 cut(s) 238, 295
BstMAI GTCTC 2 cut(s) 86, 364
BstMBI GATC 2 cut(s) 235, 292
BstMWI GCNNNNNNNGC 3 cut(s) 371, 401, 686
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 4 cut(s) 5, 181, 203, 361
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 5 cut(s) 44, 435, 457, 484, 638
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 4 cut(s) 20, 55, 471, 566
Cac8I GCNNGC 2 cut(s) 120, 379
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 8, 214
CseI GACGC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 202, 245, 646
CviAII CATG 5 cut(s) 62, 422, 440, 629, 722
CviQI GTAC 3 cut(s) 202, 245, 646
DdeI CTNAG 4 cut(s) 12, 522, 588, 681
DpnI GATC 2 cut(s) 237, 294
DpnII GATC 2 cut(s) 235, 292
DraI TTTAAA 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 8, 214
Eco57I CTGAAG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 5 cut(s) 65, 425, 443, 632, 725
FaqI GGGAC 1 cut(s) 200
FatI CATG 5 cut(s) 61, 421, 439, 628, 721
FauNDI CATATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 19, 192, 195, 375
FokI GGATG 5 cut(s) 31, 422, 444, 491, 645
Fsp4HI GCNGC 4 cut(s) 19, 192, 195, 375
FspBI CTAG 1 cut(s) 329
GluI GCNGC 4 cut(s) 19, 192, 195, 375
GsaI CCCAGC 2 cut(s) 201, 391
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 57, 302
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 5 cut(s) 65, 425, 443, 632, 725
HindIII AAGCTT 2 cut(s) 116, 339
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 57, 302
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 6 cut(s) 6, 83, 302, 553, 617, 695
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 643
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 272, 475
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 7 cut(s) 179, 191, 323, 365, 377, 464, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 401, 686
HpyF3I CTNAG 4 cut(s) 12, 522, 588, 681
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 5 cut(s) 65, 425, 443, 632, 725
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 235, 292
LmnI GCTCC 6 cut(s) 59, 107, 163, 266, 392, 518
Lsp1109I GCAGC 4 cut(s) 5, 181, 203, 361
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 94, 453
MalI GATC 2 cut(s) 237, 294
MboI GATC 2 cut(s) 235, 292
MboII GAAGA 4 cut(s) 217, 329, 578, 668
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 235
MluCI AATT 4 cut(s) 164, 333, 366, 576
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 684
MnlI CCTC 9 cut(s) 21, 47, 117, 143, 484, 562, 636, 676, 679
MroI TCCGGA 1 cut(s) 301
MseI TTAA 6 cut(s) 167, 287, 344, 495, 575, 672
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 57, 302
MunI CAATTG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 371, 401, 686
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 235, 292
NlaIII CATG 5 cut(s) 65, 425, 443, 632, 725
NlaIV GGNNCC 6 cut(s) 55, 103, 216, 262, 394, 501
NmuCI GTSAC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 4 cut(s) 20, 193, 196, 376
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
PspFI CCCAGC 2 cut(s) 197, 387
PspN4I GGNNCC 6 cut(s) 55, 103, 216, 262, 394, 501
PspPI GGNCC 2 cut(s) 8, 214
PspPPI RGGWCCY 1 cut(s) 8
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 3 cut(s) 203, 246, 647
RsaNI GTAC 3 cut(s) 202, 245, 646
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 6 cut(s) 167, 287, 344, 495, 575, 672
SatI GCNGC 4 cut(s) 19, 192, 195, 375
Sau3AI GATC 2 cut(s) 235, 292
Sau96I GGNCC 2 cut(s) 8, 214
SchI GAGTC 1 cut(s) 80
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 8, 214
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 4 cut(s) 164, 333, 366, 576
SsiI CCGC 1 cut(s) 404
SspI AATATT 1 cut(s) 612
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 272, 475
TaiI ACGT 1 cut(s) 606
TaqI TCGA 1 cut(s) 84
TasI AATT 4 cut(s) 164, 333, 366, 576
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 6 cut(s) 167, 287, 344, 495, 575, 672
Tru9I TTAA 6 cut(s) 167, 287, 344, 495, 575, 672
TscAI CASTG 4 cut(s) 20, 55, 478, 566
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 4 cut(s) 18, 191, 194, 374
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 4 cut(s) 20, 55, 478, 566
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 8, 214
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.