Rh6AG332900

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000177
Physical Location & Seq
Reverse (-)
53401249 .. 53403929
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG332900.1

Sequence Viewer

Length: 483 bp
ATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTTTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCACCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAACTTGCCATAATCCTCGCTTCTGACATCTACGGATTTGAAGCACCAAACTTAAGGAAAATTGCAGATAAAGTTGCTAGCACTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGAGCCATACAATCCGAACAACACCCAGAGGAATTTGACAGTCTGGCTGAAGGACCATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTTTAATTGCTGCTCTAAAGAACAAAGGGGTATCCAAGATAGGAGCTGCAGGGTTCTGTTGGGGCGGTAAAAAATCTAACTCCCCCTTTTACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

160

Amino Acids

17.16

Weight (kDa)

9.3

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 48 - 152 3.1e-16 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 1 cut(s) 450
AclI AACGTT 1 cut(s) 385
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 274
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 3 cut(s) 145, 215, 374
AluBI AGCT 2 cut(s) 116, 431
AluI AGCT 2 cut(s) 116, 431
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 160
ApeKI GCWGC 2 cut(s) 395, 431
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 4 cut(s) 25, 57, 353, 385
AspS9I GGNCC 3 cut(s) 68, 161, 349
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 2 cut(s) 68, 349
AxyI CCTNAGG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 382, 418
BccI CCATC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 427
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 432
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 2 cut(s) 396, 432
BlsI GCNGC 2 cut(s) 397, 433
Bme18I GGWCC 2 cut(s) 68, 349
BmgT120I GGNCC 3 cut(s) 68, 161, 349
BmiI GGNNCC 2 cut(s) 106, 279
BmsI GCATC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 382, 418
BshFI GGCC 2 cut(s) 149, 162
BsiHKAI GWGCWC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 2 cut(s) 149, 162
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 450
BspANI GGCC 2 cut(s) 149, 162
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 106, 279
BspMAI CTGCAG 1 cut(s) 436
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 352
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 382, 418
Bsu36I CCTNAGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 149, 162
BtgI CCRYGG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 68, 161, 349
Csp6I GTAC 1 cut(s) 23
CviAII CATG 3 cut(s) 20, 269, 353
CviJI RGCY 7 cut(s) 116, 141, 149, 162, 301, 343, 431
CviKI_1 RGCY 7 cut(s) 116, 141, 149, 162, 301, 343, 431
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 68, 349
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 23, 272, 356
FaiI YATR 7 cut(s) 21, 153, 185, 270, 294, 304, 354
FatI CATG 3 cut(s) 19, 268, 352
Fnu4HI GCNGC 2 cut(s) 396, 432
Fsp4HI GCNGC 2 cut(s) 396, 432
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 396, 432
HaeIII GGCC 2 cut(s) 149, 162
Hin1II CATG 3 cut(s) 23, 272, 356
HinfI GANTC 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 199, 312
Hpy188III TCNNGA 2 cut(s) 111, 281
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 139, 174, 340
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 385, 477
HpyCH4V TGCA 4 cut(s) 46, 52, 239, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 2 cut(s) 385, 477
Hsp92II CATG 3 cut(s) 23, 272, 356
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 82, 113, 428
LpnPI CCDG 9 cut(s) 51, 96, 102, 144, 246, 294, 325, 335, 420
Lsp1109I GCAGC 2 cut(s) 382, 418
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 252
MaeII ACGT 2 cut(s) 385, 477
MaeIII GTNAC 2 cut(s) 31, 154
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 234, 328, 390
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 5 cut(s) 81, 118, 131, 200, 318
MseI TTAA 4 cut(s) 99, 129, 227, 389
MspCI CTTAAG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 257
NcoI CCATGG 1 cut(s) 352
NdeII GATC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 23, 272, 356
NlaIV GGNNCC 2 cut(s) 106, 279
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 23
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 397, 433
PscI ACATGT 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 106, 279
PspPI GGNCC 3 cut(s) 68, 161, 349
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 99, 129, 227, 389
SatI GCNGC 2 cut(s) 396, 432
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 3 cut(s) 68, 161, 349
SduI GDGCHC 1 cut(s) 87
SetI ASST 8 cut(s) 61, 99, 110, 118, 370, 388, 433, 480
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 2 cut(s) 68, 349
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 234, 328, 390
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 1 cut(s) 450
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 149
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 388, 480
TasI AATT 3 cut(s) 234, 328, 390
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 4 cut(s) 99, 129, 227, 389
Tru9I TTAA 4 cut(s) 99, 129, 227, 389
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 395, 431
Tsp45I GTSAC 1 cut(s) 31
TspGWI ACGGA 2 cut(s) 117, 222
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 68, 349
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.