Rh1AG006300

hydrolase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
903355 .. 906223
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG006300.1

Sequence Viewer

Length: 315 bp
ATGGAAGTTTTGATGCAAAATTTGCCCACCACTAGTGTTATTCATTCCATAGTTGAGAAAATTATGACTTGCAGTCATCTTCTCTGGCTTTCCCCATCAAAGCTTGCTTTGTTTCTTGAGTTGCTCCAAAACGGAAGGAACAAAGGACAAGTGGGAAATTTGAGATTAAGGAAACCTACGGATAAAGTTGCTGCAGCTGGATTTTTTGTGGTGGTTCTTGATTTCTTTTATGGCGATCCTATGAATCTTGATGATCCTCAATTTGACCGAGAGTCCCGGTTTAAAGCTCATAGCAAGGTTAGTGACTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.8

Weight (kDa)

7.92

Isoelectric Point (pI)

24.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 230, 248
AcsI RAATTY 2 cut(s) 19, 157
AhdI GACNNNNNGTC 2 cut(s) 72, 271
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 3 cut(s) 103, 197, 287
AluI AGCT 3 cut(s) 103, 197, 287
AlwI GGATC 2 cut(s) 230, 248
ApeKI GCWGC 2 cut(s) 191, 194
ApoI RAATTY 2 cut(s) 19, 157
AsuC2I CCSGG 1 cut(s) 277
BbvI GCAGC 2 cut(s) 178, 206
BccI CCATC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 277
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
Bme1390I CCNGG 1 cut(s) 277
BmeRI GACNNNNNGTC 2 cut(s) 72, 271
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 3
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 178, 206
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 235, 253
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 230, 248
BssMI GATC 2 cut(s) 235, 253
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 238, 256
BstMBI GATC 2 cut(s) 235, 253
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 178, 206
Cac8I GCNNGC 1 cut(s) 105
CviJI RGCY 4 cut(s) 88, 103, 197, 287
CviKI_1 RGCY 4 cut(s) 88, 103, 197, 287
DpnI GATC 2 cut(s) 237, 255
DpnII GATC 2 cut(s) 235, 253
DraI TTTAAA 1 cut(s) 283
DriI GACNNNNNGTC 2 cut(s) 72, 271
Eam1105I GACNNNNNGTC 2 cut(s) 72, 271
FaiI YATR 5 cut(s) 50, 65, 231, 242, 291
FaqI GGGAC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 192, 195
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 1 cut(s) 33
GluI GCNGC 2 cut(s) 192, 195
HapII CCGG 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 244, 272
HpaII CCGG 1 cut(s) 277
Hpy188III TCNNGA 4 cut(s) 116, 218, 248, 312
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 16, 72, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 235, 253
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 70, 183, 290
Lsp1109I GCAGC 2 cut(s) 178, 206
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 237, 255
MboI GATC 2 cut(s) 235, 253
MboII GAAGA 1 cut(s) 71
MluCI AATT 4 cut(s) 19, 60, 157, 260
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 1 cut(s) 267
MseI TTAA 2 cut(s) 167, 282
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 235, 253
NmuCI GTSAC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 193, 196
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 197
SaqAI TTAA 2 cut(s) 167, 282
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 2 cut(s) 235, 253
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 277
SetI ASST 5 cut(s) 105, 178, 199, 289, 300
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 4 cut(s) 19, 60, 157, 260
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 275
TaqII GACCGA 1 cut(s) 282
TasI AATT 4 cut(s) 19, 60, 157, 260
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 167, 282
Tru9I TTAA 2 cut(s) 167, 282
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 191, 194
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 32, 257
TspGWI ACGGA 2 cut(s) 147, 194
XapI RAATTY 2 cut(s) 19, 157
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.