RchiOBHm_Chr1g0334461

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000177
Physical Location & Seq
Reverse (-)
26671127 .. 26672448
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56318

Sequence Viewer

Length: 861 bp
ATGGCTCCTTTATCAAGATTTATAATAGAGTCTGCTTTAATGACCTGCCTTGAGATTTATTTCCCATCCTATTTGATTGTGGGTTTTCATTACTCATTTTGGGACCTATCTACTGTCATTATTAGGAAAATTGCAGACAAAGTTGCTAGCAATGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCTAACAACACTCAGAGGAATATGACAGACTGGCTAAGGGACCATGGACCAGACAAAGGCTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAAAAAAGGGGTATCCTGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCGAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAATTCACAGTTGAAAAAACACTTACTTTCAAAAATATTGATATCCTGAAAGTCTTTTGCAACAGGCAATCTGATCTCAGACAAAAAGAACTAGTGCACTATCGCTGTCTCTTCTTTAAGTTACTAATCCAGTGTTTTCCTTTTCTTTATTCTTCTATGTCAGAGATTAAGACTCCAATAGCCATATTGGCTGCTCAATTTGACAACAGCACTGCACCTGAACTGGTGAAACAGTTTAAGGAGATTTTATCCACTAATAAGGTTGATAACTTTGTGAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTCAGGTATAAAGATGACAATGTGACCGCTGTCAAAAGCGCTAATGAAGCTCATCAAGATATGTTGGACTGGTTTATTAAGTATGTTCAAAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

286

Amino Acids

32.57

Weight (kDa)

8.8

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 41 - 142 1.5e-11 Dienelactone hydrolase family
DLH PF01738 204 - 282 1.8e-10 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 53
AciI CCGC 3 cut(s) 345, 359, 789
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 439
AfeI AGCGCT 1 cut(s) 802
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 163, 269, 467, 484, 851
AhlI ACTAGT 1 cut(s) 544
AjnI CCWGG 2 cut(s) 314, 739
AluBI AGCT 3 cut(s) 326, 364, 812
AluI AGCT 3 cut(s) 326, 364, 812
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 566
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 1 cut(s) 188
Aor51HI AGCGCT 1 cut(s) 802
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 4 cut(s) 290, 326, 389, 644
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 3 cut(s) 103, 244, 251
AsuHPI GGTGA 1 cut(s) 691
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 3 cut(s) 103, 244, 251
BaeGI GKGCMC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 277, 313, 376, 631
BccI CCATC 2 cut(s) 73, 750
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 316, 741
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 566
BcuI ACTAGT 1 cut(s) 544
BfaI CTAG 2 cut(s) 147, 545
BfmI CTRYAG 2 cut(s) 327, 390
BfoI RGCGCY 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 53
BfuI GTATCC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 641
BisI GCNGC 5 cut(s) 291, 327, 346, 390, 645
BlsI GCNGC 5 cut(s) 292, 328, 347, 391, 646
Bme1390I CCNGG 2 cut(s) 316, 741
Bme18I GGWCC 3 cut(s) 103, 244, 251
BmgT120I GGNCC 3 cut(s) 103, 244, 251
BmiI GGNNCC 4 cut(s) 6, 104, 174, 245
BmrFI CCNGG 2 cut(s) 316, 741
BmsI GCATC 2 cut(s) 262, 452
BmtI GCTAGC 1 cut(s) 150
BoxI GACNNNNGTC 1 cut(s) 791
Bpu10I CCTNAGC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 247, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 239, 583, 681, 836
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 316, 741
BseDI CCNNGG 2 cut(s) 247, 384
BseGI GGATG 3 cut(s) 65, 443, 761
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 230, 544
BseNI ACTGG 4 cut(s) 239, 583, 681, 836
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 4 cut(s) 277, 313, 376, 631
BsgI GTGCAG 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 552
BslFI GGGAC 2 cut(s) 116, 257
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 116, 257
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 2 cut(s) 193, 526
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 345, 359, 789
BspCNI CTCAG 2 cut(s) 229, 543
BspLI GGNNCC 4 cut(s) 6, 104, 174, 245
BspMAI CTGCAG 2 cut(s) 331, 394
BspMI ACCTGC 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 4 cut(s) 239, 583, 681, 836
BssECI CCNNGG 2 cut(s) 247, 384
BssMI GATC 2 cut(s) 193, 526
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 316, 741
Bst4CI ACNGT 4 cut(s) 115, 463, 687, 763
Bst6I CTCTTC 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 216, 239, 530
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 65, 443, 761
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 2 cut(s) 196, 529
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 2 cut(s) 193, 526
BstMWI GCNNNNNNNGC 3 cut(s) 152, 641, 809
BstNI CCWGG 2 cut(s) 316, 741
BstPAI GACNNNNGTC 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 314, 739
BstSFI CTRYAG 2 cut(s) 327, 390
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 277, 313, 376, 631
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 65, 443, 761
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 590, 663
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 803
Cfr13I GGNCC 3 cut(s) 103, 244, 251
Csp6I GTAC 1 cut(s) 438
CviAII CATG 2 cut(s) 248, 752
CviJI RGCY 9 cut(s) 5, 238, 264, 326, 364, 389, 635, 644, 812
CviKI_1 RGCY 9 cut(s) 5, 238, 264, 326, 364, 389, 635, 644, 812
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 3 cut(s) 216, 239, 530
DpnI GATC 2 cut(s) 195, 528
DpnII GATC 2 cut(s) 193, 526
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 247
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 3 cut(s) 103, 244, 251
Eco47III AGCGCT 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 314, 739
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 251, 755
FaqI GGGAC 2 cut(s) 116, 257
FatI CATG 2 cut(s) 247, 751
Fnu4HI GCNGC 5 cut(s) 291, 327, 346, 390, 645
FokI GGATG 3 cut(s) 52, 430, 768
Fsp4HI GCNGC 5 cut(s) 291, 327, 346, 390, 645
FspBI CTAG 2 cut(s) 147, 545
GlaI GCGC 1 cut(s) 802
GluI GCNGC 5 cut(s) 291, 327, 346, 390, 645
HaeII RGCGCY 1 cut(s) 804
HhaI GCGC 1 cut(s) 803
Hin1II CATG 2 cut(s) 251, 755
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HinfI GANTC 3 cut(s) 29, 159, 625
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 4 cut(s) 219, 526, 533, 616
Hpy188III TCNNGA 5 cut(s) 15, 176, 422, 499, 818
Hpy8I GTNNAC 1 cut(s) 550
HpyAV CCTTC 1 cut(s) 417
HpyCH4III ACNGT 4 cut(s) 115, 463, 687, 763
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 134, 329, 392, 513, 550, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 641, 809
HpyF3I CTNAG 3 cut(s) 216, 239, 530
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 251, 755
HspAI GCGC 1 cut(s) 801
Kzo9I GATC 2 cut(s) 193, 526
LmnI GCTCC 3 cut(s) 10, 323, 361
Lsp1109I GCAGC 4 cut(s) 277, 313, 376, 631
LweI GCATC 2 cut(s) 262, 452
MaeI CTAG 2 cut(s) 147, 545
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 4 cut(s) 399, 415, 573, 784
MalI GATC 2 cut(s) 195, 528
MboI GATC 2 cut(s) 193, 526
MboII GAAGA 3 cut(s) 281, 556, 597
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 4 cut(s) 129, 285, 455, 650
MlyI GAGTC 2 cut(s) 38, 619
MmeI TCCRAC 1 cut(s) 807
MnlI CCTC 2 cut(s) 213, 379
MseI TTAA 6 cut(s) 38, 432, 570, 621, 690, 840
MspA1I CMGCKG 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 316, 741
MvaI CCWGG 2 cut(s) 316, 741
MwoI GCNNNNNNNGC 3 cut(s) 152, 641, 809
NcoI CCATGG 1 cut(s) 247
NdeII GATC 2 cut(s) 193, 526
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 251, 755
NlaIV GGNNCC 4 cut(s) 6, 104, 174, 245
NmuCI GTSAC 2 cut(s) 415, 784
PfeI GAWTC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 5 cut(s) 292, 328, 347, 391, 646
PleI GAGTC 2 cut(s) 37, 619
PpsI GAGTC 2 cut(s) 37, 619
PpuMI RGGWCCY 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 791
PsiI TTATAA 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 2 cut(s) 314, 739
PspGI CCWGG 2 cut(s) 314, 739
PspN4I GGNNCC 4 cut(s) 6, 104, 174, 245
PspPI GGNCC 3 cut(s) 103, 244, 251
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 2 cut(s) 331, 394
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SaqAI TTAA 6 cut(s) 38, 432, 570, 621, 690, 840
SatI GCNGC 5 cut(s) 291, 327, 346, 390, 645
Sau3AI GATC 2 cut(s) 193, 526
Sau96I GGNCC 3 cut(s) 103, 244, 251
SchI GAGTC 2 cut(s) 38, 619
ScrFI CCNGG 2 cut(s) 316, 741
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 262, 452
SfcI CTRYAG 2 cut(s) 327, 390
SinI GGWCC 3 cut(s) 103, 244, 251
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 544
Sse9I AATT 4 cut(s) 129, 285, 455, 650
SsiI CCGC 3 cut(s) 345, 359, 789
SspI AATATT 2 cut(s) 490, 735
SspMI CTAG 2 cut(s) 147, 545
StyD4I CCNGG 2 cut(s) 314, 739
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 4 cut(s) 115, 463, 687, 763
TaiI ACGT 1 cut(s) 283
TasI AATT 4 cut(s) 129, 285, 455, 650
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 6 cut(s) 38, 432, 570, 621, 690, 840
Tru9I TTAA 6 cut(s) 38, 432, 570, 621, 690, 840
TscAI CASTG 2 cut(s) 590, 670
TseFI GTSAC 2 cut(s) 415, 784
TseI GCWGC 4 cut(s) 290, 326, 389, 644
Tsp45I GTSAC 2 cut(s) 415, 784
TspDTI ATGAA 2 cut(s) 77, 822
TspRI CASTG 2 cut(s) 590, 670
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 3 cut(s) 103, 244, 251
XspI CTAG 2 cut(s) 147, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.