RLG00000007847

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000177
Physical Location & Seq
Reverse (-)
21909804 .. 21918078
8275 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007847

Sequence Viewer

Length: 456 bp
ATGTTGAGTGTGCCCGCTCTATTGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTGCAGCTGATGGATCCATGGACTCTCTACCTACTTGGCTGAAAGGTCATGGACCGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTATTGTGGTTGTAGTTGAACTTGCAAGGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCATCTTTATTCACTGTGGATGATATCAAGGAACAGTGTGCTAGATTAGAGCTTATATTTCTGAAAAAGGGTGGAGCTGATGGAATAGTAGCTGCTACATCCATGGGACTTTGTTATGATGATGAGAGCTCAGAACAAATCCACACAAGCAGACTCCTCCTCCGTACACCACTACACCTAGAGAGTAGAGACCACCTGCATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

152

Amino Acids

16.26

Weight (kDa)

5.18

Isoelectric Point (pI)

20.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccBSI CCGCTC 2 cut(s) 17, 157
AciI CCGC 2 cut(s) 15, 155
AclWI GGATC 2 cut(s) 108, 121
AfaI GTAC 2 cut(s) 99, 415
AgsI TTSAA 2 cut(s) 25, 206
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 9 cut(s) 28, 47, 107, 176, 233, 301, 326, 341, 378
AluI AGCT 9 cut(s) 28, 47, 107, 176, 233, 301, 326, 341, 378
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 81, 432
AlwI GGATC 2 cut(s) 108, 121
AlwNI CAGNNNCTG 2 cut(s) 50, 179
ApeKI GCWGC 7 cut(s) 44, 47, 104, 173, 176, 233, 341
AspS9I GGNCC 2 cut(s) 67, 152
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 67, 152
BaeGI GKGCMC 1 cut(s) 15
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 7 cut(s) 34, 56, 116, 163, 185, 220, 328
BccI CCATC 3 cut(s) 104, 259, 323
BcoDI GTCTC 2 cut(s) 81, 432
BfaI CTAG 2 cut(s) 291, 428
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 7 cut(s) 45, 48, 105, 174, 177, 234, 342
BlsI GCNGC 7 cut(s) 46, 49, 106, 175, 178, 235, 343
Bme18I GGWCC 2 cut(s) 67, 152
BmgT120I GGNCC 2 cut(s) 67, 152
BmiI GGNNCC 2 cut(s) 69, 115
BsaI GGTCTC 2 cut(s) 81, 432
BsaJI CCNNGG 2 cut(s) 117, 351
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
BseDI CCNNGG 2 cut(s) 117, 351
BseGI GGATG 3 cut(s) 247, 274, 347
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 395, 398
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 7 cut(s) 34, 56, 116, 163, 185, 220, 328
BsiHKAI GWGCWC 1 cut(s) 380
BslFI GGGAC 2 cut(s) 53, 369
BsmAI GTCTC 2 cut(s) 81, 432
BsmFI GGGAC 2 cut(s) 53, 369
Bso31I GGTCTC 2 cut(s) 81, 432
Bsp1286I GDGCHC 2 cut(s) 15, 380
Bsp143I GATC 1 cut(s) 113
Bsp19I CCATGG 2 cut(s) 117, 351
BspACI CCGC 2 cut(s) 15, 155
BspCNI CTCAG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 69, 115
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 2 cut(s) 108, 121
BspTNI GGTCTC 2 cut(s) 81, 432
BsrBI CCGCTC 2 cut(s) 17, 157
BssECI CCNNGG 2 cut(s) 117, 351
BssMI GATC 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 117, 351
Bst4CI ACNGT 2 cut(s) 265, 285
BstC8I GCNNGC 5 cut(s) 15, 30, 52, 159, 181
BstDEI CTNAG 1 cut(s) 379
BstDSI CCRYGG 2 cut(s) 117, 351
BstF5I GGATG 3 cut(s) 247, 274, 347
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 2 cut(s) 81, 432
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 7 cut(s) 34, 56, 116, 163, 185, 220, 328
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 117, 351
BtsCI GGATG 3 cut(s) 247, 274, 347
BtsIMutI CAGTG 2 cut(s) 261, 290
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 5 cut(s) 15, 30, 52, 159, 181
CaiI CAGNNNCTG 2 cut(s) 50, 179
Cfr13I GGNCC 2 cut(s) 67, 152
Csp6I GTAC 2 cut(s) 98, 414
CviAII CATG 3 cut(s) 118, 149, 352
CviQI GTAC 2 cut(s) 98, 414
DdeI CTNAG 1 cut(s) 379
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 117, 351
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 2 cut(s) 81, 432
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 67, 152
Eco53kI GAGCTC 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 378
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 117, 351
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 117, 351
FaeI CATG 3 cut(s) 121, 152, 355
FaiI YATR 7 cut(s) 84, 96, 119, 150, 305, 353, 366
FaqI GGGAC 2 cut(s) 53, 369
FatI CATG 3 cut(s) 117, 148, 351
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 7 cut(s) 45, 48, 105, 174, 177, 234, 342
FokI GGATG 3 cut(s) 234, 281, 334
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 7 cut(s) 45, 48, 105, 174, 177, 234, 342
FspBI CTAG 2 cut(s) 291, 428
GluI GCNGC 7 cut(s) 45, 48, 105, 174, 177, 234, 342
Hin1II CATG 3 cut(s) 121, 152, 355
HinfI GANTC 2 cut(s) 122, 402
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 312, 382
Hpy8I GTNNAC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 265, 285
HpyCH4V TGCA 5 cut(s) 44, 104, 173, 212, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 3 cut(s) 121, 152, 355
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 36, 84, 114, 165, 227
Lsp1109I GCAGC 7 cut(s) 34, 56, 116, 163, 185, 220, 328
MaeI CTAG 2 cut(s) 291, 428
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 115
MbiI CCGCTC 2 cut(s) 17, 157
MboI GATC 1 cut(s) 113
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 15, 380
MlyI GAGTC 2 cut(s) 116, 396
MnlI CCTC 2 cut(s) 416, 419
MspA1I CMGCKG 3 cut(s) 47, 107, 176
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 2 cut(s) 117, 351
NdeII GATC 1 cut(s) 113
NlaIII CATG 3 cut(s) 121, 152, 355
NlaIV GGNNCC 2 cut(s) 69, 115
NmuCI GTSAC 1 cut(s) 218
PkrI GCNGC 7 cut(s) 46, 49, 106, 175, 178, 235, 343
PleI GAGTC 2 cut(s) 116, 396
PpsI GAGTC 2 cut(s) 116, 396
Psp124BI GAGCTC 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 69, 115
PspPI GGNCC 2 cut(s) 67, 152
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 2 cut(s) 50, 179
PsuI RGATCY 1 cut(s) 113
PvuII CAGCTG 3 cut(s) 47, 107, 176
RsaI GTAC 2 cut(s) 99, 415
RsaNI GTAC 2 cut(s) 98, 414
SacI GAGCTC 1 cut(s) 380
SatI GCNGC 7 cut(s) 45, 48, 105, 174, 177, 234, 342
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 2 cut(s) 67, 152
SchI GAGTC 2 cut(s) 116, 396
SduI GDGCHC 2 cut(s) 15, 380
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 67, 152
SsiI CCGC 2 cut(s) 15, 155
SspMI CTAG 2 cut(s) 291, 428
SstI GAGCTC 1 cut(s) 380
StyI CCWWGG 2 cut(s) 117, 351
TaaI ACNGT 2 cut(s) 265, 285
TscAI CASTG 2 cut(s) 268, 290
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 7 cut(s) 44, 47, 104, 173, 176, 233, 341
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 2 cut(s) 268, 290
VpaK11BI GGWCC 2 cut(s) 67, 152
XspI CTAG 2 cut(s) 291, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.