Rroxscaffold_5G00361880

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42598222 .. 42600846
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361880.1

Sequence Viewer

Length: 849 bp
ATGTCAGGCCCTCAGTGCTGCTCGAACCCACCGACCCTGAATCCAACCAGTGGATCCGGCCATGTTGAGAAGCTTGGTGGTCTCGACTCCTATCTCACTGGCTCTCCTGACTCCAAGCTTGCCATTGTTCTTCTCTCCGACATTTTTGGGTATGATGCTCCAAACTTGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACTTGCAGCTGATGGATCCTTTGACTCTCTACCTACTTGGCTGAAAGGTCATGGACCGGAGAAGGGATTTGAAGATGTTAAATTAGTTATTGAAGTTCTAAGAAGTAAAGGCGTCTCTGCAATCGGTGCTGCAGGCCTCTGTTGGGGAGCCAAGGTTGTAGTTGAACTTGCAAAGGGCGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTGCTTGGGTCACAGTGGATGATATCAAGGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCATTTGTCTCCGCCTGAACTCGTAAAACAATTTGAAGAGGCTTTGACTGCAAAGTCTGAGGTAAAATATCCTTTCATCAAAGTTATAACACCGAGACCTGATAGGAAAGAGGCACTACTGTGGTATCCGGTAGTTATTGCAATTCTAGAGTTTGAAATGACTCTTGGTTTTATGGAATTACAGATCAAAAGTCATGTGAAGATATTCCCAAAAGTGTCGCATGGATGGACTGTGAGGTATGATGTTTCAAACGAAGAAGCTGTGAAGCCCGCTGAGGAGGCTCATAAAGATTTGTTGGAGTGGTTTGTCAGCCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

282

Amino Acids

30.74

Weight (kDa)

5.52

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 29 - 193 3e-22 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AasI GACNNNNNNGTC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 2 cut(s) 536, 795
AclWI GGATC 4 cut(s) 48, 61, 255, 268
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 50, 308, 388
AgsI TTSAA 6 cut(s) 317, 338, 410, 560, 680, 774
AjuI GAANNNNNNNTTGG 4 cut(s) 426, 458, 672, 704
AleI CACNNNNGTG 1 cut(s) 643
AluBI AGCT 8 cut(s) 73, 118, 175, 194, 254, 437, 515, 785
AluI AGCT 8 cut(s) 73, 118, 175, 194, 254, 437, 515, 785
Alw26I GTCTC 5 cut(s) 86, 228, 364, 537, 613
AlwI GGATC 4 cut(s) 48, 61, 255, 268
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 3 cut(s) 7, 58, 379
ApeKI GCWGC 6 cut(s) 18, 191, 194, 251, 374, 437
Asp700I GAANNNNTTC 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 8, 214, 299
AvaII GGWCC 2 cut(s) 214, 299
BaeI ACNNNNGTAYC 2 cut(s) 632, 665
BamHI GGATCC 2 cut(s) 53, 260
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 6 cut(s) 5, 181, 203, 263, 361, 424
BccI CCATC 2 cut(s) 251, 744
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 5 cut(s) 86, 228, 364, 537, 613
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 6 cut(s) 19, 192, 195, 252, 375, 438
BlsI GCNGC 6 cut(s) 20, 193, 196, 253, 376, 439
Bme18I GGWCC 2 cut(s) 214, 299
BmgT120I GGNCC 3 cut(s) 8, 214, 299
BmiI GGNNCC 5 cut(s) 55, 216, 262, 394, 495
BmsI GCATC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 3 cut(s) 86, 228, 613
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 2 cut(s) 301, 652
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 308, 388
Bse1I ACTGG 2 cut(s) 48, 103
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 3 cut(s) 451, 478, 755
BseLI CCNNNNNNNGG 3 cut(s) 50, 308, 388
BseMII CTCAG 4 cut(s) 26, 507, 573, 789
BseNI ACTGG 2 cut(s) 48, 103
BseRI GAGGAG 1 cut(s) 815
BseXI GCAGC 6 cut(s) 5, 181, 203, 263, 361, 424
BshFI GGCC 3 cut(s) 9, 60, 381
BsiSI CCGG 3 cut(s) 57, 302, 653
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 50, 308, 388
BsmAI GTCTC 5 cut(s) 86, 228, 364, 537, 613
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 3 cut(s) 9, 60, 381
Bso31I GGTCTC 3 cut(s) 86, 228, 613
Bsp143I GATC 4 cut(s) 53, 260, 523, 708
BspACI CCGC 2 cut(s) 536, 795
BspANI GGCC 3 cut(s) 9, 60, 381
BspCNI CTCAG 4 cut(s) 25, 508, 574, 790
BspLI GGNNCC 5 cut(s) 55, 216, 262, 394, 495
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 4 cut(s) 48, 61, 255, 268
BspTNI GGTCTC 3 cut(s) 86, 228, 613
BsrI ACTGG 2 cut(s) 48, 103
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 4 cut(s) 53, 260, 523, 708
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 469, 645, 757
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 5 cut(s) 120, 177, 199, 379, 795
BstDEI CTNAG 5 cut(s) 12, 344, 516, 582, 798
BstF5I GGATG 3 cut(s) 451, 478, 755
BstKTI GATC 4 cut(s) 56, 263, 526, 711
BstMAI GTCTC 5 cut(s) 86, 228, 364, 537, 613
BstMBI GATC 4 cut(s) 53, 260, 523, 708
BstMWI GCNNNNNNNGC 6 cut(s) 15, 371, 446, 455, 572, 803
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 6 cut(s) 5, 181, 203, 263, 361, 424
BstX2I RGATCY 2 cut(s) 53, 260
BstYI RGATCY 2 cut(s) 53, 260
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 3 cut(s) 9, 60, 381
BtsCI GGATG 3 cut(s) 451, 478, 755
BtsIMutI CAGTG 4 cut(s) 20, 55, 96, 474
Cac8I GCNNGC 5 cut(s) 120, 177, 199, 379, 795
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 3 cut(s) 8, 214, 299
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 245
CviAII CATG 5 cut(s) 62, 296, 719, 746, 839
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 5 cut(s) 12, 344, 516, 582, 798
DpnI GATC 4 cut(s) 55, 262, 525, 710
DpnII GATC 4 cut(s) 53, 260, 523, 708
DrdI GACNNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 381
Eco31I GGTCTC 3 cut(s) 86, 228, 613
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 2 cut(s) 214, 299
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 5 cut(s) 65, 299, 722, 749, 842
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 200
FatI CATG 5 cut(s) 61, 295, 718, 745, 838
FauI CCCGC 1 cut(s) 802
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 6 cut(s) 19, 192, 195, 252, 375, 438
FokI GGATG 3 cut(s) 438, 485, 762
Fsp4HI GCNGC 6 cut(s) 19, 192, 195, 252, 375, 438
FspBI CTAG 1 cut(s) 671
GluI GCNGC 6 cut(s) 19, 192, 195, 252, 375, 438
HaeIII GGCC 3 cut(s) 9, 60, 381
HapII CCGG 3 cut(s) 57, 302, 653
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 5 cut(s) 65, 299, 722, 749, 842
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 5 cut(s) 40, 86, 110, 269, 685
HpaII CCGG 3 cut(s) 57, 302, 653
Hpy188I TCNGA 2 cut(s) 139, 583
Hpy188III TCNNGA 3 cut(s) 83, 107, 671
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 3 cut(s) 469, 645, 757
HpyCH4V TGCA 7 cut(s) 191, 251, 365, 377, 416, 575, 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 371, 446, 455, 572, 803
HpyF3I CTNAG 5 cut(s) 12, 344, 516, 582, 798
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 5 cut(s) 65, 299, 722, 749, 842
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 53, 260, 523, 708
LmnI GCTCC 3 cut(s) 163, 392, 512
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 263, 361, 424
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 671
MaeIII GTNAC 1 cut(s) 463
MalI GATC 4 cut(s) 55, 262, 525, 710
MboI GATC 4 cut(s) 53, 260, 523, 708
MboII GAAGA 5 cut(s) 122, 329, 572, 736, 791
MflI RGATCY 2 cut(s) 53, 260
MluCI AATT 4 cut(s) 326, 554, 666, 701
MlyI GAGTC 4 cut(s) 80, 104, 263, 679
MmeI TCCRAC 3 cut(s) 68, 162, 801
MnlI CCTC 9 cut(s) 21, 162, 392, 556, 577, 628, 753, 793, 796
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 2 cut(s) 324, 489
MslI CAYNNNNRTG 1 cut(s) 643
MspA1I CMGCKG 3 cut(s) 194, 254, 797
MspI CCGG 3 cut(s) 57, 302, 653
MwoI GCNNNNNNNGC 6 cut(s) 15, 371, 446, 455, 572, 803
NdeII GATC 4 cut(s) 53, 260, 523, 708
NlaIII CATG 5 cut(s) 65, 299, 722, 749, 842
NlaIV GGNNCC 5 cut(s) 55, 216, 262, 394, 495
NmuCI GTSAC 1 cut(s) 463
OliI CACNNNNGTG 1 cut(s) 643
PceI AGGCCT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 6 cut(s) 20, 193, 196, 253, 376, 439
PleI GAGTC 4 cut(s) 80, 104, 263, 679
PpsI GAGTC 4 cut(s) 80, 104, 263, 679
PsiI TTATAA 1 cut(s) 611
PspN4I GGNNCC 5 cut(s) 55, 216, 262, 394, 495
PspPI GGNCC 3 cut(s) 8, 214, 299
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 53, 260
PvuII CAGCTG 2 cut(s) 194, 254
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 643
SaqAI TTAA 2 cut(s) 324, 489
SatI GCNGC 6 cut(s) 19, 192, 195, 252, 375, 438
Sau3AI GATC 4 cut(s) 53, 260, 523, 708
Sau96I GGNCC 3 cut(s) 8, 214, 299
SchI GAGTC 4 cut(s) 80, 104, 263, 679
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 214, 299
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 326, 554, 666, 701
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 2 cut(s) 536, 795
SspMI CTAG 1 cut(s) 671
StuI AGGCCT 1 cut(s) 381
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 469, 645, 757
TaqI TCGA 2 cut(s) 23, 84
TasI AATT 4 cut(s) 326, 554, 666, 701
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 324, 489
Tru9I TTAA 2 cut(s) 324, 489
TscAI CASTG 4 cut(s) 20, 55, 103, 474
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 6 cut(s) 18, 191, 194, 251, 374, 437
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 589
TspRI CASTG 4 cut(s) 20, 55, 103, 474
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 214, 299
XbaI TCTAGA 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.