Rroxscaffold_5G00361860

hydrolase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
42588105 .. 42588995
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361860.1

Sequence Viewer

Length: 240 bp
ATGGAGATTCAATATTTGAAAATTGGTGATAACAACCTGTGTATAATAACAGAAGGGACTTACCTCCACCAACATCCAGAGATCCAAGATTCTAAGGAATTTGATAGCTTTGTGAAAATATTTCCTGGAGTGGCTCATGGATGGACAATGAGGTACAATGCGGAGGATGAATCTGCAGTCAAGAGTGCTGAAGAGGCTCATTTGGACATGTTAAATTGGTTTACCAAGTATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.22

Weight (kDa)

4.98

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 11, 19
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AlwI GGATC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 38
BccI CCATC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 3 cut(s) 73, 146, 172
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 76
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 73, 146, 172
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BtsCI GGATG 3 cut(s) 73, 146, 172
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 137, 208
CviJI RGCY 3 cut(s) 108, 134, 197
CviKI_1 RGCY 3 cut(s) 108, 134, 197
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 140, 211
FaiI YATR 4 cut(s) 44, 138, 209, 231
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 136, 207
FokI GGATG 3 cut(s) 60, 153, 179
GsuI CTGGAG 1 cut(s) 147
Hin1II CATG 2 cut(s) 140, 211
HinfI GANTC 3 cut(s) 7, 89, 170
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 77, 181
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 140, 211
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 4 cut(s) 50, 90, 111, 138
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 81
MluCI AATT 3 cut(s) 21, 98, 214
MnlI CCTC 4 cut(s) 74, 144, 157, 187
MseI TTAA 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 140, 211
NspI RCATGY 1 cut(s) 211
PciI ACATGT 1 cut(s) 207
PfeI GAWTC 3 cut(s) 7, 89, 170
PfoI TCCNGGA 1 cut(s) 124
PscI ACATGT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 126
SetI ASST 4 cut(s) 39, 66, 110, 155
SfcI CTRYAG 1 cut(s) 174
SgeI CNNG 8 cut(s) 49, 89, 98, 137, 138, 149, 193, 220
Sse9I AATT 3 cut(s) 21, 98, 214
SsiI CCGC 1 cut(s) 161
SspI AATATT 2 cut(s) 14, 120
StyD4I CCNGG 1 cut(s) 124
TasI AATT 3 cut(s) 21, 98, 214
TfiI GAWTC 3 cut(s) 7, 89, 170
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 183
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.