Rh4BG214700

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000177
Physical Location & Seq
Reverse (-)
37392257 .. 37395337
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG214700.1

Sequence Viewer

Length: 660 bp
ATGGCTCTACACTGTTCGACGACGTCTGATTTGAACCGGACGATTTGTAGAACTGTAGCAGGGATCTGTCCAACTCGCGACATCGTTGAGGAGGTCATCACCGGCTTCGATGAGATCGATCTCCACCGCTCGACCCGAAGACCCGATCTGTGCCAGAGGAGGAGTCGTGGACGAACGTCCGGTACTTTAGAAGGTGAGGCCGAAACGAAGACTTGCTTCGAGAACCCACCAACACTAAGCTCAACATACGGAAAAGGAACTGTCCTAGAATTTGGGGGCCTGAAGACTTACGTTACTGGCTCAACTGAATCTAAGCTTGCAGTCCTTCTAGTCTCCGATGTTTTTGGATATGAAAACCCAAATATAAGGAAACTTGCGGATAAAGTTGCTGCAGCTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTATGGCGACCCTGTGAATTTTGATAATCCTCAATTCGACCGAGAGTCCTGGTTAATAGCTCACAGCAAGTTGTCTTTTGAACTGCTAATGGAAAAAGGATACGAGGATTCTAAACCAGTCCTTGCTGCATTAAAGAGTCAAGGTGTTTCTGCAATAGGAGCTGCAGGATTTTGCTGGGGAGGTAAACCCTTTAAAACCTGGGATGCATTAGTTGTCAATAAAGAAGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

219

Amino Acids

24.01

Weight (kDa)

5.7

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 95 - 204 2.1e-14 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 127, 377
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 269, 442
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 2 cut(s) 34, 506
AhdI GACNNNNNGTC 1 cut(s) 469
AjnI CCWGG 2 cut(s) 473, 623
AluBI AGCT 5 cut(s) 240, 316, 395, 485, 587
AluI AGCT 5 cut(s) 240, 316, 395, 485, 587
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 198, 277
ApeKI GCWGC 4 cut(s) 389, 392, 551, 587
ApoI RAATTY 2 cut(s) 269, 442
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 91, 206
BbsI GAAGAC 3 cut(s) 145, 215, 290
BbvI GCAGC 4 cut(s) 376, 404, 538, 574
BciT130I CCWGG 2 cut(s) 475, 625
BciVI GTATCC 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 2 cut(s) 266, 329
BfmI CTRYAG 3 cut(s) 54, 390, 588
BfuI GTATCC 1 cut(s) 518
BisI GCNGC 4 cut(s) 390, 393, 552, 588
BlsI GCNGC 4 cut(s) 391, 394, 553, 589
Bme1390I CCNGG 2 cut(s) 475, 625
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 278, 414
BmrFI CCNGG 2 cut(s) 475, 625
BmsI GCATC 1 cut(s) 619
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 3 cut(s) 145, 215, 290
Bsa29I ATCGAT 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 624
BsaWI WCCGGW 2 cut(s) 36, 179
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 301, 542
BseBI CCWGG 2 cut(s) 475, 625
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 624
BseGI GGATG 1 cut(s) 634
BseNI ACTGG 2 cut(s) 301, 542
BseRI GAGGAG 3 cut(s) 104, 172, 175
BseXI GCAGC 4 cut(s) 376, 404, 538, 574
BseYI CCCAGC 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 2 cut(s) 200, 279
BshVI ATCGAT 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 466
BsiSI CCGG 3 cut(s) 37, 102, 180
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 2 cut(s) 200, 279
Bsp143I GATC 4 cut(s) 63, 114, 118, 145
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 2 cut(s) 127, 377
BspANI GGCC 2 cut(s) 200, 279
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 278, 414
BspMAI CTGCAG 2 cut(s) 394, 592
BspPI GGATC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 301, 542
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 624
BssMI GATC 4 cut(s) 63, 114, 118, 145
BssNI GRCGYC 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 475, 625
Bst4CI ACNGT 3 cut(s) 14, 55, 262
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 236, 312
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 4 cut(s) 66, 117, 121, 148
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 4 cut(s) 63, 114, 118, 145
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 2 cut(s) 475, 625
BstPAI GACNNNNGTC 1 cut(s) 175
BstSCI CCNGG 2 cut(s) 473, 623
BstSFI CTRYAG 3 cut(s) 54, 390, 588
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 376, 404, 538, 574
BstV2I GAAGAC 3 cut(s) 145, 215, 290
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 117
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 2 cut(s) 200, 279
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 1 cut(s) 10
BtuMI TCGCGA 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 183
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 236, 312
DpnI GATC 4 cut(s) 65, 116, 120, 147
DpnII GATC 4 cut(s) 63, 114, 118, 145
DraI TTTAAA 1 cut(s) 619
DriI GACNNNNNGTC 1 cut(s) 469
Eam1105I GACNNNNNGTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 473, 623
EcoT22I ATGCAT 1 cut(s) 634
FaiI YATR 4 cut(s) 247, 351, 365, 429
FalI AAGNNNNNCTT 2 cut(s) 200, 232
Fnu4HI GCNGC 4 cut(s) 390, 393, 552, 588
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 4 cut(s) 390, 393, 552, 588
FspBI CTAG 2 cut(s) 266, 329
GluI GCNGC 4 cut(s) 390, 393, 552, 588
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 2 cut(s) 200, 279
HapII CCGG 3 cut(s) 37, 102, 180
Hin1I GRCGYC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 5 cut(s) 163, 308, 470, 533, 562
HpaII CCGG 3 cut(s) 37, 102, 180
HphI GGTGA 2 cut(s) 91, 206
Hpy166II GTNNAC 2 cut(s) 170, 611
Hpy188I TCNGA 2 cut(s) 28, 337
Hpy188III TCNNGA 3 cut(s) 77, 220, 416
Hpy8I GTNNAC 2 cut(s) 170, 611
Hpy99I CGWCG 2 cut(s) 22, 25
HpyAV CCTTC 2 cut(s) 185, 335
HpyCH4III ACNGT 3 cut(s) 14, 55, 262
HpyCH4IV ACGT 3 cut(s) 23, 176, 291
HpyCH4V TGCA 6 cut(s) 320, 392, 554, 578, 590, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 2 cut(s) 236, 312
HpySE526I ACGT 3 cut(s) 23, 176, 291
Hsp92I GRCGYC 1 cut(s) 23
Kzo9I GATC 4 cut(s) 63, 114, 118, 145
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 4 cut(s) 376, 404, 538, 574
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 266, 329
MaeII ACGT 3 cut(s) 23, 176, 291
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 65, 116, 120, 147
MbiI CCGCTC 1 cut(s) 129
MboI GATC 4 cut(s) 63, 114, 118, 145
MboII GAAGA 3 cut(s) 150, 220, 295
MflI RGATCY 1 cut(s) 63
MluCI AATT 3 cut(s) 269, 442, 458
MlyI GAGTC 3 cut(s) 172, 479, 571
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 8 cut(s) 82, 85, 150, 153, 190, 465, 523, 599
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 479, 557, 618
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 3 cut(s) 37, 102, 180
MspR9I CCNGG 2 cut(s) 475, 625
MvaI CCWGG 2 cut(s) 475, 625
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 4 cut(s) 63, 114, 118, 145
NlaIV GGNNCC 2 cut(s) 278, 414
NruI TCGCGA 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 308, 533
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 391, 394, 553, 589
PleI GAGTC 3 cut(s) 171, 478, 570
PpsI GAGTC 3 cut(s) 171, 478, 570
PshAI GACNNNNGTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 473, 623
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 473, 623
PspN4I GGNNCC 2 cut(s) 278, 414
PspPI GGNCC 1 cut(s) 277
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PstI CTGCAG 2 cut(s) 394, 592
PsuI RGATCY 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 395
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 479, 557, 618
SatI GCNGC 4 cut(s) 390, 393, 552, 588
Sau3AI GATC 4 cut(s) 63, 114, 118, 145
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 3 cut(s) 172, 479, 571
ScrFI CCNGG 2 cut(s) 475, 625
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 3 cut(s) 54, 390, 588
Sse9I AATT 3 cut(s) 269, 442, 458
SsiI CCGC 2 cut(s) 127, 377
SspMI CTAG 2 cut(s) 266, 329
StyD4I CCNGG 2 cut(s) 473, 623
TaaI ACNGT 3 cut(s) 14, 55, 262
TaiI ACGT 3 cut(s) 26, 179, 294
TaqI TCGA 6 cut(s) 17, 108, 117, 131, 219, 462
TaqII GACCGA 1 cut(s) 480
TasI AATT 3 cut(s) 269, 442, 458
TfiI GAWTC 2 cut(s) 308, 533
Tru1I TTAA 3 cut(s) 479, 557, 618
Tru9I TTAA 3 cut(s) 479, 557, 618
TscAI CASTG 1 cut(s) 17
TseI GCWGC 4 cut(s) 389, 392, 551, 587
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 22
XapI RAATTY 2 cut(s) 269, 442
XspI CTAG 2 cut(s) 266, 329
ZraI GACGTC 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.