MD13G1181600.v1.1

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
15126079 .. 15127862
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1181600.v1.1.491

Sequence Viewer

Length: 219 bp
ATGTCACTGGCTCCCCTGACTCCAAGCTTTCCGTTCTTCTCGTCCATGATGCTTTTGGTACTTTACCCACCACTGGCACTCCAAAAGAACCTTGCAGACAAAATTGCAGCTGCTGGGTTCATTGTTGTGCTCCCTAACTTCTTCAACGGAGACCCTTTTAATGGGGACCATGCCTCTATTCCCGTTTGGAGAAAAGCTCATGCACCGCCTTGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

7.81

Weight (kDa)

7.96

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AfaI GTAC 2 cut(s) 60, 214
AfiI CCNNNNNNNGG 2 cut(s) 73, 161
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 3 cut(s) 27, 110, 197
AluI AGCT 3 cut(s) 27, 110, 197
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 107, 110
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 97, 119
BcoDI GTCTC 1 cut(s) 144
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 12, 167
BmsI GCATC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BsaI GGTCTC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 161
Bse1I ACTGG 2 cut(s) 12, 78
BseLI CCNNNNNNNGG 2 cut(s) 73, 161
BseNI ACTGG 2 cut(s) 12, 78
BseXI GCAGC 2 cut(s) 97, 119
BseYI CCCAGC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 73, 161
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 212
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 12, 167
BspTNI GGTCTC 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 212
BsrI ACTGG 2 cut(s) 12, 78
BstAUI TGTACA 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 97, 119
BtsIMutI CAGTG 2 cut(s) 5, 71
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 59, 213
CviAII CATG 3 cut(s) 46, 170, 200
CviJI RGCY 4 cut(s) 11, 27, 110, 197
CviKI_1 RGCY 4 cut(s) 11, 27, 110, 197
CviQI GTAC 2 cut(s) 59, 213
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 166
FaeI CATG 3 cut(s) 49, 173, 203
FaiI YATR 4 cut(s) 47, 171, 201, 217
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 45, 169, 199
Fnu4HI GCNGC 2 cut(s) 108, 111
Fsp4HI GCNGC 2 cut(s) 108, 111
GluI GCNGC 2 cut(s) 108, 111
GsaI CCCAGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 49, 173, 203
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 95, 107, 203
Hsp92II CATG 3 cut(s) 49, 173, 203
LmnI GCTCC 2 cut(s) 16, 135
LpnPI CCDG 3 cut(s) 29, 59, 99
Lsp1109I GCAGC 2 cut(s) 97, 119
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 28, 133
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 184
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 110
NlaIII CATG 3 cut(s) 49, 173, 203
NlaIV GGNNCC 2 cut(s) 12, 167
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 12, 167
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 60, 214
RsaNI GTAC 2 cut(s) 59, 213
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 108, 111
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 29, 93, 112, 199
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 206
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 12, 78
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 107, 110
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 109
TspGWI ACGGA 2 cut(s) 21, 162
TspRI CASTG 2 cut(s) 12, 78
VpaK11BI GGWCC 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.