Rorug06G0220500

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000177
Physical Location & Seq
Reverse (-)
35309063 .. 35309925
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0220500.1

Sequence Viewer

Length: 774 bp
ATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

257

Amino Acids

28.05

Weight (kDa)

4.94

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 48 - 109 6.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 642
AccB7I CCANNNNNTGG 1 cut(s) 467
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 2 cut(s) 47, 708
AclI AACGTT 1 cut(s) 729
AclWI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 2 cut(s) 145, 382
AfiI CCNNNNNNNGG 2 cut(s) 467, 629
AgsI TTSAA 1 cut(s) 605
AhlI ACTAGT 2 cut(s) 368, 497
AjnI CCWGG 2 cut(s) 146, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 37, 107, 253, 464, 742, 764
AluI AGCT 6 cut(s) 37, 107, 253, 464, 742, 764
Alw21I GWGCWC 4 cut(s) 39, 630, 682, 744
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 2 cut(s) 626, 678
AlwI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 1 cut(s) 758
AoxI GGCC 1 cut(s) 458
ApaLI GTGCAC 2 cut(s) 626, 678
ApeKI GCWGC 3 cut(s) 104, 347, 764
ArsI GACNNNNNNTTYG 4 cut(s) 437, 469, 470, 502
Asp700I GAANNNNTTC 1 cut(s) 370
AspS9I GGNCC 3 cut(s) 411, 458, 492
AsuHPI GGTGA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 411, 492
BaeGI GKGCMC 4 cut(s) 218, 360, 630, 682
BamHI GGATCC 2 cut(s) 437, 470
BanII GRGCYC 3 cut(s) 39, 316, 744
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 4 cut(s) 39, 630, 682, 744
BbvI GCAGC 3 cut(s) 116, 334, 751
BccI CCATC 3 cut(s) 449, 506, 763
BceAI ACGGC 2 cut(s) 126, 646
BciT130I CCWGG 2 cut(s) 148, 596
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 2 cut(s) 368, 497
BfaI CTAG 3 cut(s) 369, 498, 772
BfmI CTRYAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 240
BisI GCNGC 3 cut(s) 105, 348, 765
BlpI GCTNAGC 1 cut(s) 743
BlsI GCNGC 3 cut(s) 106, 349, 766
Bme1390I CCNGG 2 cut(s) 148, 596
Bme18I GGWCC 2 cut(s) 411, 492
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 411, 458, 492
BmiI GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
BmrFI CCNGG 2 cut(s) 148, 596
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 4 cut(s) 147, 233, 336, 576
Bpu10I CCTNAGC 1 cut(s) 703
Bpu1102I GCTNAGC 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 167, 758
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 629
Bse1I ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BseAI TCCGGA 1 cut(s) 758
BseBI CCWGG 2 cut(s) 148, 596
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 2 cut(s) 566, 755
BseLI CCNNNNNNNGG 2 cut(s) 467, 629
BseMII CTCAG 2 cut(s) 717, 757
BseNI ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BseRI GAGGAG 3 cut(s) 98, 597, 600
BseSI GKGCMC 4 cut(s) 218, 360, 630, 682
BseXI GCAGC 3 cut(s) 116, 334, 751
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 4 cut(s) 39, 630, 682, 744
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 759
BslI CCNNNNNNNGG 2 cut(s) 467, 629
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 7 cut(s) 39, 218, 316, 360, 630, 682, 744
Bsp13I TCCGGA 1 cut(s) 758
Bsp143I GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Bsp1720I GCTNAGC 1 cut(s) 743
BspACI CCGC 2 cut(s) 47, 708
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 716, 756
BspEI TCCGGA 1 cut(s) 758
BspLI GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
BspPI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
BsrI ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 148, 596
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 703, 743
BstEII GGTNACC 1 cut(s) 647
BstF5I GGATG 2 cut(s) 566, 755
BstKTI GATC 9 cut(s) 190, 243, 392, 400, 440, 473, 521, 529, 592
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
BstNI CCWGG 2 cut(s) 148, 596
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 146, 594
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 4 cut(s) 218, 360, 630, 682
BstV1I GCAGC 3 cut(s) 116, 334, 751
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 566, 755
BtsIMutI CAGTG 3 cut(s) 360, 414, 724
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 3 cut(s) 411, 458, 492
CsiI ACCWGGT 1 cut(s) 146
Csp6I GTAC 2 cut(s) 144, 381
CviAII CATG 3 cut(s) 124, 361, 683
CviQI GTAC 2 cut(s) 144, 381
DdeI CTNAG 2 cut(s) 703, 743
DpnI GATC 9 cut(s) 189, 242, 391, 399, 439, 472, 520, 528, 591
DpnII GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 2 cut(s) 37, 742
Eco24I GRGCYC 3 cut(s) 39, 316, 744
Eco47I GGWCC 2 cut(s) 411, 492
Eco53kI GAGCTC 2 cut(s) 37, 742
Eco57I CTGAAG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 647
EcoICRI GAGCTC 2 cut(s) 37, 742
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 146, 594
EcoT38I GRGCYC 3 cut(s) 39, 316, 744
FaeI CATG 3 cut(s) 127, 364, 686
FaiI YATR 6 cut(s) 125, 198, 264, 270, 362, 684
FatI CATG 3 cut(s) 123, 360, 682
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 105, 348, 765
FokI GGATG 2 cut(s) 553, 742
FriOI GRGCYC 3 cut(s) 39, 316, 744
Fsp4HI GCNGC 3 cut(s) 105, 348, 765
FspBI CTAG 3 cut(s) 369, 498, 772
GluI GCNGC 3 cut(s) 105, 348, 765
GsuI CTGGAG 4 cut(s) 147, 233, 336, 576
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 759
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 3 cut(s) 127, 364, 686
HinfI GANTC 3 cut(s) 154, 177, 232
HpaII CCGG 1 cut(s) 759
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 4 cut(s) 414, 495, 628, 680
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 6 cut(s) 164, 236, 301, 317, 737, 759
Hpy8I GTNNAC 4 cut(s) 414, 495, 628, 680
HpyAV CCTTC 1 cut(s) 665
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 306, 639, 729
HpyCH4V TGCA 4 cut(s) 25, 574, 628, 680
HpyF3I CTNAG 2 cut(s) 703, 743
HpySE526I ACGT 3 cut(s) 306, 639, 729
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 3 cut(s) 127, 364, 686
Kpn2I TCCGGA 1 cut(s) 758
Kzo9I GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
LmnI GCTCC 4 cut(s) 34, 42, 355, 761
Lsp1109I GCAGC 3 cut(s) 116, 334, 751
MabI ACCWGGT 1 cut(s) 146
MaeI CTAG 3 cut(s) 369, 498, 772
MaeII ACGT 3 cut(s) 306, 639, 729
MaeIII GTNAC 2 cut(s) 647, 710
MalI GATC 9 cut(s) 189, 242, 391, 399, 439, 472, 520, 528, 591
MboI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
MboII GAAGA 2 cut(s) 602, 667
MflI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
MhlI GDGCHC 7 cut(s) 39, 218, 316, 360, 630, 682, 744
MluCI AATT 3 cut(s) 403, 451, 484
MroI TCCGGA 1 cut(s) 758
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 3 cut(s) 107, 253, 464
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 148, 596
MvaI CCWGG 2 cut(s) 148, 596
NdeII GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
NlaIII CATG 3 cut(s) 127, 364, 686
NlaIV GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
PaeR7I CTCGAG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 154, 177, 232
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 3 cut(s) 106, 349, 766
Psp124BI GAGCTC 2 cut(s) 39, 744
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 146, 594
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 146, 594
PspN4I GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
PspPI GGNCC 3 cut(s) 411, 458, 492
PsuI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
PvuII CAGCTG 3 cut(s) 107, 253, 464
RsaI GTAC 2 cut(s) 145, 382
RsaNI GTAC 2 cut(s) 144, 381
SacI GAGCTC 2 cut(s) 39, 744
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 105, 348, 765
Sau3AI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Sau96I GGNCC 3 cut(s) 411, 458, 492
ScrFI CCNGG 2 cut(s) 148, 596
SduI GDGCHC 7 cut(s) 39, 218, 316, 360, 630, 682, 744
SexAI ACCWGGT 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 411, 492
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 3 cut(s) 182, 315, 737
SmoI CTYRAG 3 cut(s) 182, 315, 737
SpeI ACTAGT 2 cut(s) 368, 497
Sse9I AATT 3 cut(s) 403, 451, 484
SsiI CCGC 2 cut(s) 47, 708
SspMI CTAG 3 cut(s) 369, 498, 772
SstI GAGCTC 2 cut(s) 39, 744
StyD4I CCNGG 2 cut(s) 146, 594
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 309, 642, 732
TaqI TCGA 2 cut(s) 316, 444
TasI AATT 3 cut(s) 403, 451, 484
TfiI GAWTC 3 cut(s) 154, 177, 232
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 360, 421, 724
TseI GCWGC 3 cut(s) 104, 347, 764
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 3 cut(s) 360, 421, 724
Van91I CCANNNNNTGG 1 cut(s) 467
VneI GTGCAC 2 cut(s) 626, 678
VpaK11BI GGWCC 2 cut(s) 411, 492
XhoI CTCGAG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 369, 498, 772
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.