pycom13g15700

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000177
Physical Location & Seq
Reverse (-)
11449369 .. 11450211
843 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15700.2

Sequence Viewer

Length: 561 bp
ATGTGTGTGTGTGTGTGTATATATATATATATTTTCCTGAGAAGAAAAATAGCGGATAAAGTTGCTGCAGCCGGATTTTTGGCGGTAGTTCCTGATTTCTTTTATGGCGACCCTGTTAATCCCGCTAACCCGCAGTTCGATGCTGAGATATGGTTCAAAATTCATAGCACGGAGAGAGGATGTGAAGATGCAAAACCGTTGATTGCTGCTCTGAAGAGTCAAGGCGTTTCCGCCATCGGAGCTGCAGGCTTTTGCTGGGGAGGGAATGTGGCGGTGAAACTAGGGAAAACCGACGAGATTCAGGCCGCTGTAATACTGCATCCTGGTCGATTAACAGATGAGGAAATCGATCGACATGTTTATGCAGAGGTTAAGGTTCCTACTGCAATATTGGGAGCTGAGACTGACAAGCATTCACCCGCTGAACAAATGAAACACTTTGGGGATATTTTGTCAACTAAATGTGACAAATTGATCTCTCAGAGAAAAAAAAAAAAAAAACACCACATTAAATCTCAACTTATTTGTTTCAAAGATTTCATCTTTTTTCCATACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

187

Amino Acids

20.71

Weight (kDa)

8.62

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 53, 83, 123, 131, 231, 272, 306, 420
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 2 cut(s) 157, 532
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 2 cut(s) 242, 398
AluI AGCT 2 cut(s) 242, 398
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 4 cut(s) 65, 68, 206, 242
ApoI RAATTY 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 286, 408
BbvI GCAGC 4 cut(s) 52, 80, 193, 229
BccI CCATC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 66, 243
BisI GCNGC 5 cut(s) 66, 69, 207, 243, 306
BlsI GCNGC 5 cut(s) 67, 70, 208, 244, 307
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 3 cut(s) 130, 178, 328
Bsa29I ATCGAT 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
BseBI CCWGG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 348
BseGI GGATG 2 cut(s) 185, 319
BseMII CTCAG 4 cut(s) 29, 135, 390, 494
BseXI GCAGC 4 cut(s) 52, 80, 193, 229
BseYI CCCAGC 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 349, 474
BspACI CCGC 8 cut(s) 53, 83, 123, 131, 231, 272, 306, 420
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 4 cut(s) 30, 136, 391, 493
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 2 cut(s) 70, 247
BssMI GATC 2 cut(s) 349, 474
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 4 cut(s) 38, 144, 399, 480
BstF5I GGATG 2 cut(s) 185, 319
BstKTI GATC 2 cut(s) 352, 477
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 349, 474
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 2 cut(s) 66, 243
BstV1I GCAGC 4 cut(s) 52, 80, 193, 229
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 1 cut(s) 305
BsuTUI ATCGAT 1 cut(s) 348
BtsCI GGATG 2 cut(s) 185, 319
Cac8I GCNNGC 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 348
CviAII CATG 1 cut(s) 356
CviJI RGCY 5 cut(s) 71, 242, 249, 305, 398
CviKI_1 RGCY 5 cut(s) 71, 242, 249, 305, 398
DdeI CTNAG 4 cut(s) 38, 144, 399, 480
DpnI GATC 2 cut(s) 351, 476
DpnII GATC 2 cut(s) 349, 474
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 359
FatI CATG 1 cut(s) 355
FauI CCCGC 3 cut(s) 130, 138, 427
Fnu4HI GCNGC 5 cut(s) 66, 69, 207, 243, 306
FokI GGATG 2 cut(s) 192, 306
Fsp4HI GCNGC 5 cut(s) 66, 69, 207, 243, 306
FspBI CTAG 1 cut(s) 281
GluI GCNGC 5 cut(s) 66, 69, 207, 243, 306
GsaI CCCAGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 305
HapII CCGG 1 cut(s) 72
Hin1II CATG 1 cut(s) 359
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 2 cut(s) 217, 298
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 286, 408
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 3 cut(s) 213, 239, 483
Hpy188III TCNNGA 2 cut(s) 37, 92
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 68, 191, 245, 319, 365, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 4 cut(s) 38, 144, 399, 480
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 2 cut(s) 349, 474
LmnI GCTCC 2 cut(s) 239, 395
LpnPI CCDG 9 cut(s) 50, 85, 105, 126, 231, 241, 287, 309, 336
Lsp1109I GCAGC 4 cut(s) 52, 80, 193, 229
LweI GCATC 3 cut(s) 130, 178, 328
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 351, 476
MboI GATC 2 cut(s) 349, 474
MboII GAAGA 3 cut(s) 54, 197, 226
MluCI AATT 2 cut(s) 159, 470
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 4 cut(s) 170, 254, 334, 361
MseI TTAA 4 cut(s) 117, 332, 372, 510
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 308, 422
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 349, 474
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 1 cut(s) 359
PciI ACATGT 1 cut(s) 355
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 5 cut(s) 67, 70, 208, 244, 307
Ple19I CGATCG 1 cut(s) 352
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 378
PstI CTGCAG 2 cut(s) 70, 247
PvuI CGATCG 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 4 cut(s) 117, 332, 372, 510
SatI GCNGC 5 cut(s) 66, 69, 207, 243, 306
Sau3AI GATC 2 cut(s) 349, 474
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 324
SetI ASST 4 cut(s) 244, 372, 378, 400
SfaNI GCATC 3 cut(s) 130, 178, 328
SfcI CTRYAG 2 cut(s) 66, 243
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 2 cut(s) 159, 470
SsiI CCGC 8 cut(s) 53, 83, 123, 131, 231, 272, 306, 420
SspI AATATT 1 cut(s) 390
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 138, 328, 348, 352
TasI AATT 2 cut(s) 159, 470
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 4 cut(s) 117, 332, 372, 510
Tru9I TTAA 4 cut(s) 117, 332, 372, 510
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 4 cut(s) 65, 68, 206, 242
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 152, 446, 529
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 159
XceI RCATGY 1 cut(s) 359
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.