Rh1DG143200

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
30229574 .. 30231527
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG143200.1

Sequence Viewer

Length: 462 bp
ATGCTCAGAATGTTCACCATAGTATTACATTTAGTCTGTGTGATTTTGTGTCAGCAATTGCAACAAGGTGTGTCTGGTCATCAGTGCTTGGAGCATCCACCCAACCTAAACGCAACCTCAGGAGCTGGAACAGTCACTGAAGTTGGAGGCTTGAAGGCCTATGTGACTGGCCCTTCCAATTCCGAGCTTGCCATAATCCTTGCTTCTGACATCTATGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCGAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAATTCACAGTTGAAAAAACACTTATTTTAAAAAATATTGATATCCTGAAAGTCTTTTGCAACAGGCTGAAAGTCTTTTGCAACAGGCTCCTGAAAGTCTTTTGCAACAGGCATCTGATCTCAGACAAAAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

16.8

Weight (kDa)

8.94

Isoelectric Point (pI)

18.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 2 cut(s) 154, 338
AluBI AGCT 3 cut(s) 125, 187, 235
AluI AGCT 3 cut(s) 125, 187, 235
AlwNI CAGNNNCTG 2 cut(s) 125, 137
AoxI GGCC 2 cut(s) 156, 169
ApeKI GCWGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 118
BbvI GCAGC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 327
BfaI CTAG 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 413
BmsI GCATC 3 cut(s) 103, 323, 445
BsaJI CCNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 94, 314
BseMII CTCAG 3 cut(s) 19, 132, 459
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 158, 171
BsnI GGCC 2 cut(s) 158, 171
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 158, 171
BspCNI CTCAG 3 cut(s) 18, 131, 458
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 133, 334
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 5, 118, 445
BstF5I GGATG 2 cut(s) 94, 314
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 158, 171
BtsCI GGATG 2 cut(s) 94, 314
BtsIMutI CAGTG 2 cut(s) 89, 135
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 2 cut(s) 125, 137
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 309
CviJI RGCY 9 cut(s) 125, 150, 158, 171, 187, 235, 260, 391, 412
CviKI_1 RGCY 9 cut(s) 125, 150, 158, 171, 187, 235, 260, 391, 412
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 5, 118, 445
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
DraI TTTAAA 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 158
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 367
FaiI YATR 4 cut(s) 20, 162, 194, 216
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 2 cut(s) 81, 301
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 460
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 158, 171
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 5 cut(s) 8, 184, 208, 441, 448
Hpy188III TCNNGA 4 cut(s) 120, 293, 370, 415
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 148, 183, 288
HpyCH4III ACNGT 2 cut(s) 133, 334
HpyCH4V TGCA 5 cut(s) 61, 263, 384, 405, 429
HpyF3I CTNAG 3 cut(s) 5, 118, 445
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 4 cut(s) 91, 122, 232, 417
LpnPI CCDG 9 cut(s) 60, 105, 111, 153, 373, 383, 394, 418, 428
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 3 cut(s) 103, 323, 445
MaeI CTAG 1 cut(s) 460
MaeIII GTNAC 4 cut(s) 133, 163, 270, 286
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MfeI CAATTG 1 cut(s) 56
MluCI AATT 3 cut(s) 56, 178, 326
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 127, 140, 250
MseI TTAA 2 cut(s) 303, 353
MunI CAATTG 1 cut(s) 56
NdeII GATC 1 cut(s) 441
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 3 cut(s) 133, 163, 286
PceI AGGCCT 1 cut(s) 158
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 2 cut(s) 125, 137
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 303, 353
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 170
SetI ASST 7 cut(s) 70, 108, 119, 127, 189, 237, 310
SfaNI GCATC 3 cut(s) 103, 323, 445
SfcI CTRYAG 1 cut(s) 261
Sse9I AATT 3 cut(s) 56, 178, 326
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 460
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 2 cut(s) 133, 334
TasI AATT 3 cut(s) 56, 178, 326
Tru1I TTAA 2 cut(s) 303, 353
Tru9I TTAA 2 cut(s) 303, 353
TscAI CASTG 2 cut(s) 89, 142
TseFI GTSAC 3 cut(s) 133, 163, 286
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 3 cut(s) 133, 163, 286
TspRI CASTG 2 cut(s) 89, 142
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.