RchiOBHm_Chr6g0291601

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
54677922 .. 54678092
171 bp
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UTR
Exon/CDS
Intron
PRQ26164

Sequence Viewer

Length: 171 bp
ATGAAGTTAACGGAATTAATTGATGCTTTCTTTCTAAACAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTTAGGTATCAAGATAACAATGTGACTGCTGTCAAAAGTGCTAACGAAGCTCATCAAGATATGTTGGACTGGTTTACCAAGTATGTTCAAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.6

Weight (kDa)

8.11

Isoelectric Point (pI)

23.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AseI ATTAAT 1 cut(s) 17
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 13
BoxI GACNNNNGTC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 73
BstF5I GGATG 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 51
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 71
CviAII CATG 1 cut(s) 62
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 63, 134, 156
FatI CATG 1 cut(s) 61
FokI GGATG 1 cut(s) 78
FspEI CC 8 cut(s) 36, 48, 52, 61, 63, 122, 127, 163
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HpaI GTTAAC 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 9, 147
Hpy188III TCNNGA 2 cut(s) 83, 128
Hpy8I GTNNAC 2 cut(s) 9, 147
HpyCH4III ACNGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 36, 63, 127
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 94
MluCI AATT 2 cut(s) 14, 18
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 2 cut(s) 8, 17
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 8, 17
ScrFI CCNGG 1 cut(s) 51
SetI ASST 2 cut(s) 80, 124
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 7 cut(s) 62, 63, 74, 95, 140, 154, 163
Sse9I AATT 2 cut(s) 14, 18
SspI AATATT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 73
TasI AATT 2 cut(s) 14, 18
Tru1I TTAA 2 cut(s) 8, 17
Tru9I TTAA 2 cut(s) 8, 17
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 26
VspI ATTAAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.