RLG00000012104

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000177
Physical Location & Seq
Forward (+)
15280486 .. 15286760
6275 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012104

Sequence Viewer

Length: 573 bp
ATGACGTGGCGGTCCGAGCTTGAGGATGATATGAGGCAAAATTTGAGTAAAAATGTGTTTAGGTTGTTTCTTGTCCTCAAGCGCTACGATGGTGGTGTTTTCCTGAAGAGGGACGGCGAATCGTGGAAAATTGCAGATAAAGTTGCTAGCACTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGAGCCATACAATCCTAACAACACTCAGAGGAATATGACGGTCTGGCTAAAGGACCATGGAACAGTTTGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACGGCACTCCACCTGAACTCATGAAACAGTTTAAGGAGGCTTTATCCACTAATAAGGTAAGCAGCTCCCAACTTCGAATGGTCAAATGTTCACTCTCTCGTACAAAATTCCTAAGAAATGTTAAAGCAATGGGAGATGGTCTACATGTGACAAAATCACAAGAAGTTACCGGAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

9.58

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 169
AccI GTMKAC 1 cut(s) 532
AciI CCGC 3 cut(s) 10, 272, 350
AcsI RAATTY 2 cut(s) 40, 497
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 493
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 109, 169
AflIII ACRYGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 6
AluBI AGCT 3 cut(s) 19, 277, 456
AluI AGCT 3 cut(s) 19, 277, 456
Aor51HI AGCGCT 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 302, 453
ApoI RAATTY 2 cut(s) 40, 497
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 12, 244
AsuII TTCGAA 1 cut(s) 466
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 2 cut(s) 12, 244
BbvI GCAGC 2 cut(s) 289, 465
BccI CCATC 2 cut(s) 83, 521
BceAI ACGGC 2 cut(s) 130, 409
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 303, 454
BlsI GCNGC 2 cut(s) 304, 455
Bme18I GGWCC 2 cut(s) 12, 244
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 12, 244
BmiI GGNNCC 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 466
BpuEI CTTGAG 2 cut(s) 41, 62
BsaJI CCNNGG 2 cut(s) 247, 297
BsaWI WCCGGW 1 cut(s) 560
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 169
Bse3DI GCAATG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 247, 297
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 109, 169
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 289, 465
BsiSI CCGG 1 cut(s) 561
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 109, 169
BsmFI GGGAC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 466
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 10, 272, 350
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 307
BspOI GCTAGC 1 cut(s) 150
BspT104I TTCGAA 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 525
BssECI CCNNGG 2 cut(s) 247, 297
BssT1I CCWWGG 2 cut(s) 247, 297
Bst4CI ACNGT 3 cut(s) 232, 256, 420
Bst6I CTCTTC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 216, 503
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 16, 152
BstNSI RCATGY 1 cut(s) 539
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 289, 465
BtgI CCRYGG 1 cut(s) 247
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 411
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 12, 244
CpoI CGGWCCG 1 cut(s) 12
Csp6I GTAC 1 cut(s) 492
CspI CGGWCCG 1 cut(s) 12
CviAII CATG 4 cut(s) 164, 248, 412, 536
CviJI RGCY 8 cut(s) 19, 196, 238, 277, 302, 368, 431, 456
CviKI_1 RGCY 8 cut(s) 19, 196, 238, 277, 302, 368, 431, 456
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 2 cut(s) 216, 503
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 247, 297
Eco47I GGWCC 2 cut(s) 12, 244
Eco47III AGCGCT 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 247, 297
ErhI CCWWGG 2 cut(s) 247, 297
FaeI CATG 4 cut(s) 167, 251, 415, 539
FaiI YATR 9 cut(s) 32, 165, 189, 199, 227, 249, 371, 413, 537
FaqI GGGAC 1 cut(s) 125
FatI CATG 4 cut(s) 163, 247, 411, 535
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 303, 454
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 303, 454
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 303, 454
HaeII RGCGCY 1 cut(s) 85
HapII CCGG 1 cut(s) 561
HhaI GCGC 1 cut(s) 84
Hin1II CATG 4 cut(s) 167, 251, 415, 539
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 3 cut(s) 119, 159, 358
HpaII CCGG 1 cut(s) 561
Hpy166II GTNNAC 2 cut(s) 482, 533
Hpy188I TCNGA 2 cut(s) 16, 219
Hpy188III TCNNGA 4 cut(s) 103, 176, 335, 412
Hpy8I GTNNAC 2 cut(s) 482, 533
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 3 cut(s) 232, 256, 420
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 134, 261, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 152
HpyF3I CTNAG 2 cut(s) 216, 503
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 4 cut(s) 167, 251, 415, 539
HspAI GCGC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 274, 461
LpnPI CCDG 5 cut(s) 116, 141, 189, 220, 417
Lsp1109I GCAGC 2 cut(s) 289, 465
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 312, 328, 538, 556
MboII GAAGA 1 cut(s) 118
MluCI AATT 6 cut(s) 40, 129, 383, 497, 564, 568
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 6 cut(s) 16, 27, 86, 102, 213, 421
MseI TTAA 5 cut(s) 345, 354, 423, 513, 567
MspI CCGG 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 16, 152
NcoI CCATGG 1 cut(s) 247
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 167, 251, 415, 539
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 328, 538
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 1 cut(s) 466
PagI TCATGA 1 cut(s) 411
PciI ACATGT 1 cut(s) 535
PfeI GAWTC 2 cut(s) 119, 159
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 2 cut(s) 304, 455
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PscI ACATGT 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 2 cut(s) 12, 244
PstI CTGCAG 1 cut(s) 307
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
Rsr2I CGGWCCG 1 cut(s) 12
RsrII CGGWCCG 1 cut(s) 12
SaqAI TTAA 5 cut(s) 345, 354, 423, 513, 567
SatI GCNGC 2 cut(s) 303, 454
Sau96I GGNCC 2 cut(s) 12, 244
SchI GAGTC 1 cut(s) 352
SetI ASST 7 cut(s) 8, 21, 65, 279, 406, 450, 458
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 466
SinI GGWCC 2 cut(s) 12, 244
SmlI CTYRAG 2 cut(s) 20, 77
SmoI CTYRAG 2 cut(s) 20, 77
Sse9I AATT 6 cut(s) 40, 129, 383, 497, 564, 568
SsiI CCGC 3 cut(s) 10, 272, 350
SspMI CTAG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 247, 297
TaaI ACNGT 3 cut(s) 232, 256, 420
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 466
TasI AATT 6 cut(s) 40, 129, 383, 497, 564, 568
TfiI GAWTC 2 cut(s) 119, 159
Tru1I TTAA 5 cut(s) 345, 354, 423, 513, 567
Tru9I TTAA 5 cut(s) 345, 354, 423, 513, 567
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 328, 538
TseI GCWGC 2 cut(s) 302, 453
Tsp45I GTSAC 2 cut(s) 328, 538
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 12, 244
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 2 cut(s) 40, 497
XceI RCATGY 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.