RchiOBHm_Chr6g0291621

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000177
Physical Location & Seq
Reverse (-)
54692216 .. 54694824
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26166

Sequence Viewer

Length: 795 bp
ATGCTCAGAATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCATCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACGTCTACGGATTTGAAGCACCAAACTTAAGGAAAATTGCAGATAAAGTTGCTAGCACTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGAGCCATACAATCCTAACAACACTCAGAGGAATATGACAGTCTGGCTAAAGGACCATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTTTAATTGCTGCTCTAAAGAACAAAGGGGTATCCAAGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGCTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACGGCACTCCACCTGAACTCATGAAACAGTTTAAGGAGGCTTTATCTACTAATAAGATTGACAACGTTGTGAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTAAGGTATCAAGATAACAATGTGACCGCTGTCAAAAGTGCTAATGAAGCTCATCAAGATATGTTAGACTGGTTTACCAAGGATGTTCAAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

264

Amino Acids

28.84

Weight (kDa)

9.3

Isoelectric Point (pI)

18.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 52 - 259 2.3e-36 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 283
AccI GTMKAC 1 cut(s) 213
AciI CCGC 4 cut(s) 459, 473, 551, 723
AclI AACGTT 2 cut(s) 394, 657
AclWI GGATC 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 4 cut(s) 154, 224, 383, 785
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 5 cut(s) 125, 187, 440, 478, 746
AluI AGCT 5 cut(s) 125, 187, 440, 478, 746
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 2 cut(s) 156, 169
ApeKI GCWGC 3 cut(s) 404, 440, 503
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspS9I GGNCC 3 cut(s) 77, 170, 358
AsuHPI GGTGA 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 2 cut(s) 77, 358
AxyI CCTNAGG 1 cut(s) 118
BbvI GCAGC 3 cut(s) 391, 427, 490
BccI CCATC 2 cut(s) 26, 684
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 436
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 441, 504
BfrI CTTAAG 1 cut(s) 235
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 4 cut(s) 405, 441, 460, 504
BlsI GCNGC 4 cut(s) 406, 442, 461, 505
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 77, 358
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 77, 170, 358
BmiI GGNNCC 2 cut(s) 115, 288
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 103, 376
BmtI GCTAGC 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 725
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 361, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 172, 770
Bse21I CCTNAGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 361, 774
BseGI GGATG 3 cut(s) 94, 695, 784
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 19, 132, 344
BseNI ACTGG 2 cut(s) 172, 770
BseXI GCAGC 3 cut(s) 391, 427, 490
BshFI GGCC 2 cut(s) 158, 171
BslI CCNNNNNNNGG 1 cut(s) 283
BsnI GGCC 2 cut(s) 158, 171
Bsp143I GATC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 4 cut(s) 459, 473, 551, 723
BspANI GGCC 2 cut(s) 158, 171
BspCNI CTCAG 3 cut(s) 18, 131, 343
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 115, 288
BspMAI CTGCAG 2 cut(s) 445, 508
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 172, 770
BssECI CCNNGG 2 cut(s) 361, 774
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 361, 774
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 3 cut(s) 346, 621, 697
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 189, 262
BstDEI CTNAG 4 cut(s) 5, 118, 330, 498
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 3 cut(s) 94, 695, 784
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 266, 743
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 1 cut(s) 32
BstPAI GACNNNNGTC 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 2 cut(s) 441, 504
BstV1I GCAGC 3 cut(s) 391, 427, 490
Bsu36I CCTNAGG 1 cut(s) 118
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 158, 171
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 94, 695, 784
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 189, 262
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 612
Cfr13I GGNCC 3 cut(s) 77, 170, 358
Csp6I GTAC 1 cut(s) 32
CviAII CATG 5 cut(s) 29, 278, 362, 613, 686
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 4 cut(s) 5, 118, 330, 498
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 361, 774
Eco147I AGGCCT 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 77, 358
Eco81I CCTNAGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 361, 774
ErhI CCWWGG 2 cut(s) 361, 774
FaeI CATG 5 cut(s) 32, 281, 365, 616, 689
FatI CATG 5 cut(s) 28, 277, 361, 612, 685
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 405, 441, 460, 504
FokI GGATG 3 cut(s) 81, 702, 791
Fsp4HI GCNGC 4 cut(s) 405, 441, 460, 504
FspBI CTAG 1 cut(s) 261
GluI GCNGC 4 cut(s) 405, 441, 460, 504
HaeIII GGCC 2 cut(s) 158, 171
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 32, 281, 365, 616, 689
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 273, 559
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 3 cut(s) 15, 214, 771
Hpy188I TCNGA 3 cut(s) 8, 208, 333
Hpy188III TCNNGA 6 cut(s) 120, 290, 536, 613, 707, 752
Hpy8I GTNNAC 3 cut(s) 15, 214, 771
HpyAV CCTTC 3 cut(s) 148, 183, 531
HpyCH4III ACNGT 3 cut(s) 346, 621, 697
HpyCH4IV ACGT 3 cut(s) 210, 394, 657
HpyCH4V TGCA 5 cut(s) 55, 61, 248, 443, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 743
HpyF3I CTNAG 4 cut(s) 5, 118, 330, 498
HpySE526I ACGT 3 cut(s) 210, 394, 657
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 32, 281, 365, 616, 689
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 4 cut(s) 91, 122, 437, 475
Lsp1109I GCAGC 3 cut(s) 391, 427, 490
LweI GCATC 2 cut(s) 103, 376
MaeI CTAG 1 cut(s) 261
MaeII ACGT 3 cut(s) 210, 394, 657
MaeIII GTNAC 4 cut(s) 40, 163, 529, 718
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 395
MluCI AATT 3 cut(s) 243, 399, 584
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 6 cut(s) 90, 127, 140, 209, 327, 622
MseI TTAA 7 cut(s) 108, 138, 236, 398, 546, 555, 624
MspA1I CMGCKG 1 cut(s) 725
MspCI CTTAAG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 266, 743
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 128
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 5 cut(s) 32, 281, 365, 616, 689
NlaIV GGNNCC 2 cut(s) 115, 288
NmuCI GTSAC 3 cut(s) 40, 529, 718
NspI RCATGY 1 cut(s) 32
PagI TCATGA 1 cut(s) 612
PceI AGGCCT 1 cut(s) 158
PciI ACATGT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 4 cut(s) 406, 442, 461, 505
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PscI ACATGT 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 725
Psp1406I AACGTT 2 cut(s) 394, 657
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 115, 288
PspPI GGNCC 3 cut(s) 77, 170, 358
PstI CTGCAG 2 cut(s) 445, 508
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 7 cut(s) 108, 138, 236, 398, 546, 555, 624
SatI GCNGC 4 cut(s) 405, 441, 460, 504
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 3 cut(s) 77, 170, 358
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 2 cut(s) 103, 376
SfcI CTRYAG 2 cut(s) 441, 504
SinI GGWCC 2 cut(s) 77, 358
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 3 cut(s) 243, 399, 584
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 4 cut(s) 459, 473, 551, 723
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 361, 774
TaaI ACNGT 3 cut(s) 346, 621, 697
TaiI ACGT 3 cut(s) 213, 397, 660
TasI AATT 3 cut(s) 243, 399, 584
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 7 cut(s) 108, 138, 236, 398, 546, 555, 624
Tru9I TTAA 7 cut(s) 108, 138, 236, 398, 546, 555, 624
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 3 cut(s) 40, 529, 718
TseI GCWGC 3 cut(s) 404, 440, 503
Tsp45I GTSAC 3 cut(s) 40, 529, 718
TspDTI ATGAA 2 cut(s) 629, 756
TspGWI ACGGA 2 cut(s) 126, 231
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 77, 358
XceI RCATGY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 261
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.