RLG00000012101

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
15248711 .. 15250324
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012101

Sequence Viewer

Length: 360 bp
ATGTTGCTTGGATTTGAAGCACCAAAGTTCAGGGAGCTTGCAGACAAAACTGCTACCGTTTCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATTCAATCCTGACAAAACTGAGAGGCTTGTGTGGCTACAGTCTCATGGAACAGTTAGTAAGGTAGTTGTGGAGCTATCAAAGTCTGATTACATTCAGGCTGCAGTGTTGTTGCACCCTTCTCGTGTCACTGTTGATGATATTAAAGGTACAAATATTACCTTACACGAATTCACAGTTGAAAAACCAGGTGCTCCCAAAACCCTGATGTCCCGGAAGTTTTTCCTGCAGCAAGCAATCTATTCTCTGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

8.0

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 3 cut(s) 17, 109, 284
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 2 cut(s) 37, 178
AluI AGCT 2 cut(s) 37, 178
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 203, 331
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 316
BauI CACGAG 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 190, 343
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 150
BfmI CTRYAG 3 cut(s) 140, 204, 329
BisI GCNGC 2 cut(s) 204, 332
BlsI GCNGC 2 cut(s) 205, 333
Bme1390I CCNGG 2 cut(s) 291, 316
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 291, 316
BpuMI CCSGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 190, 343
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 2 cut(s) 208, 333
BspPI GGATC 1 cut(s) 95
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 5 cut(s) 58, 144, 157, 235, 280
BstC8I GCNNGC 2 cut(s) 39, 336
BstDEI CTNAG 1 cut(s) 123
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 314
BstSFI CTRYAG 3 cut(s) 140, 204, 329
BstV1I GCAGC 2 cut(s) 190, 343
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 231
Cac8I GCNNGC 2 cut(s) 39, 336
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 252
CviAII CATG 2 cut(s) 71, 149
CviJI RGCY 5 cut(s) 37, 130, 139, 178, 203
CviKI_1 RGCY 5 cut(s) 37, 130, 139, 178, 203
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 74, 152
FaiI YATR 3 cut(s) 72, 96, 150
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 70, 148
Fnu4HI GCNGC 2 cut(s) 204, 332
Fsp4HI GCNGC 2 cut(s) 204, 332
GluI GCNGC 2 cut(s) 204, 332
HapII CCGG 1 cut(s) 316
Hin1II CATG 2 cut(s) 74, 152
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 190, 351
Hpy188III TCNNGA 3 cut(s) 63, 83, 113
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 5 cut(s) 58, 144, 157, 235, 280
HpyCH4V TGCA 4 cut(s) 41, 206, 217, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 74, 152
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 3 cut(s) 34, 175, 301
Lsp1109I GCAGC 2 cut(s) 190, 343
MabI ACCWGGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 272
MnlI CCTC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 1 cut(s) 246
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 2 cut(s) 291, 316
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 316
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 74, 152
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 2 cut(s) 205, 333
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 81
PstI CTGCAG 2 cut(s) 208, 333
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 204, 332
Sau3AI GATC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 291, 316
SduI GDGCHC 1 cut(s) 298
SetI ASST 6 cut(s) 39, 168, 180, 253, 266, 295
SexAI ACCWGGT 1 cut(s) 289
SfcI CTRYAG 3 cut(s) 140, 204, 329
Sse9I AATT 1 cut(s) 272
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 289, 314
TaaI ACNGT 5 cut(s) 58, 144, 157, 235, 280
TasI AATT 1 cut(s) 272
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 213, 238
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 203, 331
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 2 cut(s) 213, 238
Van91I CCANNNNNTGG 1 cut(s) 76
XapI RAATTY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.