pycom13g15640

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000177
Physical Location & Seq
Reverse (-)
11394918 .. 11397697
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15640.6

Sequence Viewer

Length: 714 bp
ATGGCAAGCTCTGAGTGCTGCTCAAACCCACCAGCCCTGAACCCGTCCAGCGGCTCCGGCCACGTCGAAAAGCTAGGCGGTTTCGATTCCTATGTCACCGGCTCCCCTGACTCCAGGCTTTCAGTTCTTCTCGTCCATGACGCTTTTGGATATGAAGCTCCAAAGGCTAGGAAGCTTGCAGACAAAATTGCAGCTGCTGGGTTCATTGTTGTGCTCCCAGACTTCTTGAACGGAGACCCTTTTAATTGGGACCGTGCCTCTATACCCGTTTGGAAAAAAGCTCATGCACCGGAAAAAACAATCGAAGATGCAAAACTGGTCATTGAAGCTTTAAGAAGTAAAGGTGTTTCTGCAATTGGTGCTGCAGGCTTCTGTTGGGGCGCCAAGGGTGTCGTTGATCTTGCGAAGCATGACTTTATCCAAGCTGCTGTTCTGTGTCATCCTTCATCTGTCACTCTGGATGATATCAAGGCGGTTAAGGTTCCGATTTCTGTACTCGGAGCTGAGATTGATGAGATGTATCCACCCGAAGTCATCAAACAATTTGAAGAGGTTTTAACTGCAAAACCTGAGATTAAAAGCCATGTGAAGATATTCCCGAAGGTGGCACACGGGTGGACATCGAGGTATGACGATGAAGACAAGGTGGCTGTCAAGGCGGCTGAGGAGGCTCATCAAGATTTGTTGGGGTGGTTCTTGGAGCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

238

Amino Acids

25.61

Weight (kDa)

5.71

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 4 cut(s) 51, 78, 473, 659
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 50, 604
AgsI TTSAA 3 cut(s) 229, 326, 548
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AleI CACNNNNGTG 1 cut(s) 613
AluBI AGCT 9 cut(s) 9, 73, 158, 175, 194, 281, 329, 425, 503
AluI AGCT 9 cut(s) 9, 73, 158, 175, 194, 281, 329, 425, 503
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 5 cut(s) 18, 191, 194, 362, 425
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 663
BbvI GCAGC 5 cut(s) 5, 181, 203, 349, 412
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 2 cut(s) 74, 168
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 384
BfuI GTATCC 1 cut(s) 531
BisI GCNGC 7 cut(s) 19, 52, 192, 195, 363, 426, 660
BlsI GCNGC 7 cut(s) 20, 53, 193, 196, 364, 427, 661
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 5 cut(s) 55, 103, 251, 382, 483
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 645
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 604
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 439, 466
BseLI CCNNNNNNNGG 2 cut(s) 50, 604
BseMII CTCAG 3 cut(s) 495, 561, 654
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 5 cut(s) 5, 181, 203, 349, 412
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 3 cut(s) 57, 99, 290
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 50, 604
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 4 cut(s) 51, 78, 473, 659
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 4 cut(s) 4, 496, 562, 655
BspLI GGNNCC 5 cut(s) 55, 103, 251, 382, 483
BspMAI CTGCAG 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 397
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 7, 177, 367
BstDEI CTNAG 4 cut(s) 12, 504, 570, 663
BstF5I GGATG 2 cut(s) 439, 466
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 6 cut(s) 15, 57, 164, 359, 656, 668
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 5 cut(s) 5, 181, 203, 349, 412
BstV2I GAAGAC 1 cut(s) 645
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 1 cut(s) 60
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 439, 466
Cac8I GCNNGC 3 cut(s) 7, 177, 367
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 494
CviAII CATG 5 cut(s) 137, 284, 410, 584, 704
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 4 cut(s) 12, 504, 570, 663
DinI GGCGCC 1 cut(s) 382
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 113
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 384
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 140, 287, 413, 587, 707
FaiI YATR 9 cut(s) 93, 138, 153, 263, 285, 411, 585, 630, 705
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 263
FatI CATG 5 cut(s) 136, 283, 409, 583, 703
Fnu4HI GCNGC 7 cut(s) 19, 52, 192, 195, 363, 426, 660
FokI GGATG 2 cut(s) 426, 473
Fsp4HI GCNGC 7 cut(s) 19, 52, 192, 195, 363, 426, 660
FspBI CTAG 2 cut(s) 74, 168
GlaI GCGC 1 cut(s) 382
GluI GCNGC 7 cut(s) 19, 52, 192, 195, 363, 426, 660
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 1 cut(s) 60
HapII CCGG 3 cut(s) 57, 99, 290
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 5 cut(s) 140, 287, 413, 587, 707
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HindIII AAGCTT 2 cut(s) 173, 327
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 3 cut(s) 57, 99, 290
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 3 cut(s) 13, 486, 500
Hpy188III TCNNGA 4 cut(s) 226, 458, 598, 677
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 453, 595
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 179, 191, 287, 311, 353, 365, 563
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 57, 164, 359, 656, 668
HpyF3I CTNAG 4 cut(s) 12, 504, 570, 663
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 5 cut(s) 140, 287, 413, 587, 707
HspAI GCGC 1 cut(s) 381
KasI GGCGCC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 6 cut(s) 59, 107, 163, 219, 500, 700
Lsp1109I GCAGC 5 cut(s) 5, 181, 203, 349, 412
LweI GCATC 1 cut(s) 298
MaeI CTAG 2 cut(s) 74, 168
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 94, 451
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 5 cut(s) 119, 317, 560, 601, 650
MfeI CAATTG 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 186, 244, 354, 542
Mly113I GGCGCC 1 cut(s) 381
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 5 cut(s) 268, 544, 618, 658, 661
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 5 cut(s) 243, 332, 477, 557, 576
MslI CAYNNNNRTG 2 cut(s) 209, 613
MspA1I CMGCKG 2 cut(s) 51, 194
MspI CCGG 3 cut(s) 57, 99, 290
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 6 cut(s) 15, 57, 164, 359, 656, 668
NarI GGCGCC 1 cut(s) 381
NdeII GATC 1 cut(s) 397
NlaIII CATG 5 cut(s) 140, 287, 413, 587, 707
NlaIV GGNNCC 5 cut(s) 55, 103, 251, 382, 483
NmuCI GTSAC 2 cut(s) 94, 451
NspI RCATGY 1 cut(s) 707
OliI CACNNNNGTG 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 7 cut(s) 20, 53, 193, 196, 364, 427, 661
PleI GAGTC 1 cut(s) 104
PluTI GGCGCC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 5 cut(s) 55, 103, 251, 382, 483
PspPI GGNCC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 209, 613
SaqAI TTAA 5 cut(s) 243, 332, 477, 557, 576
SatI GCNGC 7 cut(s) 19, 52, 192, 195, 363, 426, 660
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 382
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 209, 613
Sse9I AATT 4 cut(s) 186, 244, 354, 542
SsiI CCGC 4 cut(s) 51, 78, 473, 659
SspDI GGCGCC 1 cut(s) 380
SspMI CTAG 2 cut(s) 74, 168
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 66, 84, 303, 623
TasI AATT 4 cut(s) 186, 244, 354, 542
TatI WGTACW 1 cut(s) 493
TauI GCSGC 2 cut(s) 54, 662
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 5 cut(s) 243, 332, 477, 557, 576
Tru9I TTAA 5 cut(s) 243, 332, 477, 557, 576
TseFI GTSAC 2 cut(s) 94, 451
TseI GCWGC 5 cut(s) 18, 191, 194, 362, 425
Tsp45I GTSAC 2 cut(s) 94, 451
TspDTI ATGAA 4 cut(s) 168, 193, 435, 651
TspGWI ACGGA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 250
XceI RCATGY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 2 cut(s) 74, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.