RchiOBHm_Chr4g0418571

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Forward (+)
44015762 .. 44018019
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38855

Sequence Viewer

Length: 510 bp
ATGTCAACTTCTTCAGCTGCAGAAGGAACTGTCCTTCATTTTGGGGGCCTGAAGAGCTACGTCACTGGCTCAACTGAATCTAAGCTTGCAGTCCTTCTAGTCTCCAATGTTGTTGGATATGAATACCCAAACTTAAGGAAACTTGCGGATAAAGTTGCTGCAGCTGGATTTTTTGTGGTGGTTCCTGATTTCTTTTATGGCGACCCTATGAATCTTGATAATCCTCAATTCGACCGTGAGGCATGGCATAAAGCCCATAGCGTGGAAAAGGCATACGAGGATGCCAAACCAGTGCTTGCCGCTCTAAAAAGTCAAAGTGTTTCTGCAATAGGAGCTGCAGGATTTTGCTGGGGAGGTAATGTAGTGGCCAAACTTGCAAAATCTGATGACATTAAGGCCGCTGTGATATTGCACCCTGGCCGGTTAGCAGATGAAGATGTACATGAGGTTAAGGTTCATACTGCAATATTGGGAGCTGAGATTGATAAATATGCCCCCCAGAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

169

Amino Acids

18.04

Weight (kDa)

5.83

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 18 - 163 2.5e-21 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 302
AciI CCGC 3 cut(s) 146, 300, 399
AcoI YGGCCR 2 cut(s) 366, 418
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 262
AflII CTTAAG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 6 cut(s) 17, 57, 85, 164, 335, 476
AluI AGCT 6 cut(s) 17, 57, 85, 164, 335, 476
Alw26I GTCTC 1 cut(s) 106
AoxI GGCC 4 cut(s) 46, 366, 396, 418
ApeKI GCWGC 4 cut(s) 17, 158, 161, 335
AspS9I GGNCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 368
BbvI GCAGC 4 cut(s) 4, 145, 173, 322
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 3 cut(s) 18, 159, 336
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 6 cut(s) 18, 159, 162, 300, 336, 399
BlsI GCNGC 6 cut(s) 19, 160, 163, 301, 337, 400
Bme1390I CCNGG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 47, 183
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 70, 290
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 70, 290
BseXI GCAGC 4 cut(s) 4, 145, 173, 322
BseYI CCCAGC 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 4 cut(s) 48, 368, 398, 420
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 4 cut(s) 48, 368, 398, 420
Bsp1407I TGTACA 1 cut(s) 439
BspACI CCGC 3 cut(s) 146, 300, 399
BspANI GGCC 4 cut(s) 48, 368, 398, 420
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 47, 183
BspMAI CTGCAG 3 cut(s) 22, 163, 340
BspQI GCTCTTC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 2 cut(s) 70, 290
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 31, 236
Bst6I CTCTTC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 87, 297
BstDEI CTNAG 2 cut(s) 81, 477
BstF5I GGATG 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 106
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 54, 332, 374
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 3 cut(s) 18, 159, 336
BstV1I GCAGC 4 cut(s) 4, 145, 173, 322
BsuRI GGCC 4 cut(s) 48, 368, 398, 420
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 63, 297
Cac8I GCNNGC 2 cut(s) 87, 297
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 440
CviAII CATG 2 cut(s) 243, 443
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 2 cut(s) 81, 477
EaeI YGGCCR 2 cut(s) 366, 418
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 246, 446
FatI CATG 2 cut(s) 242, 442
Fnu4HI GCNGC 6 cut(s) 18, 159, 162, 300, 336, 399
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 6 cut(s) 18, 159, 162, 300, 336, 399
FspBI CTAG 1 cut(s) 98
GluI GCNGC 6 cut(s) 18, 159, 162, 300, 336, 399
GsaI CCCAGC 1 cut(s) 352
HaeIII GGCC 4 cut(s) 48, 368, 398, 420
HapII CCGG 1 cut(s) 421
Hin1II CATG 2 cut(s) 246, 446
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 77, 211
HpaII CCGG 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 185, 215
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 17, 44, 104
HpyCH4III ACNGT 2 cut(s) 31, 236
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 8 cut(s) 20, 89, 161, 326, 338, 377, 412, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 332, 374
HpyF3I CTNAG 2 cut(s) 81, 477
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 246, 446
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 332, 473
Lsp1109I GCAGC 4 cut(s) 4, 145, 173, 322
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 61
MbiI CCGCTC 1 cut(s) 302
MboII GAAGA 3 cut(s) 3, 64, 446
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 232, 234, 271, 347, 439
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 3 cut(s) 134, 393, 450
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 3 cut(s) 17, 164, 401
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 3 cut(s) 54, 332, 374
NlaIII CATG 2 cut(s) 246, 446
NlaIV GGNNCC 2 cut(s) 47, 183
NmuCI GTSAC 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 77, 211
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 6 cut(s) 19, 160, 163, 301, 337, 400
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 47, 183
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 3 cut(s) 22, 163, 340
PvuII CAGCTG 2 cut(s) 17, 164
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 134, 393, 450
SatI GCNGC 6 cut(s) 18, 159, 162, 300, 336, 399
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 417
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 3 cut(s) 18, 159, 336
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 1 cut(s) 227
SsiI CCGC 3 cut(s) 146, 300, 399
SspI AATATT 1 cut(s) 468
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 2 cut(s) 31, 236
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 302, 401
TfiI GAWTC 2 cut(s) 77, 211
Tru1I TTAA 3 cut(s) 134, 393, 450
Tru9I TTAA 3 cut(s) 134, 393, 450
TscAI CASTG 2 cut(s) 70, 297
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 17, 158, 161, 335
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 5 cut(s) 26, 135, 224, 446, 447
TspRI CASTG 2 cut(s) 70, 297
Van91I CCANNNNNTGG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 133
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.