Rh6DG333400

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
53835656 .. 53838765
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG333400.1

Sequence Viewer

Length: 570 bp
ATGTCTGGTCCTCAGTGCTGCGAGAACCCACCGAGCGTTAGCTCAACCTGCGGAGCTGGATCAGTCACTGAAATTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTGATTCCAAGCTTGCCATTCTCCTGGTTTCTGATATCCATGGATTTGAAGCACCAAAGTTCAGGGAGCTTGCAGACAAAACTGCTACCGTTTCCGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATTCAATCCTGACAAAACTGAGAGGCTTGTGTGGCTACAGTCTCATGGAACAGACAAAGGATTTGAAGATGCTAAACTTGTAATTGGTGCTCTAAGGAACAAAGGGATCTCCACAATAGGAACTGCAGGGTTCTGTTGGGGAGGTAAGGTAGTTGTGGAGCTATCGAAGTCTGATTACATTCAGGCTGCAGTGTTGTTGCACCCTTCTCGTGTCACTGTTGATGATATTAAAGGTACGAATATTACCTTACACGAATTCACAGTTGAAAAACCAGGTGCTCCCAAAACCCTGATGTCCTGGAAGTTTTTCCTGCAGCAAGCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

20.3

Weight (kDa)

6.19

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 28 - 160 1.2e-15 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 1 cut(s) 51
AclWI GGATC 3 cut(s) 67, 233, 356
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 5 cut(s) 85, 155, 247, 308, 509
AjnI CCWGG 3 cut(s) 129, 514, 539
AluBI AGCT 5 cut(s) 42, 56, 118, 175, 403
AluI AGCT 5 cut(s) 42, 56, 118, 175, 403
Alw21I GWGCWC 2 cut(s) 334, 523
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 67, 233, 356
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 2 cut(s) 87, 100
ApeKI GCWGC 3 cut(s) 18, 428, 556
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 8, 101
AvaII GGWCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 334, 523
BbvI GCAGC 2 cut(s) 5, 415
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 3 cut(s) 131, 516, 541
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 568
BfmI CTRYAG 4 cut(s) 278, 366, 429, 554
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 3 cut(s) 19, 429, 557
BlsI GCNGC 3 cut(s) 20, 430, 558
Bme1390I CCNGG 3 cut(s) 131, 516, 541
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 101
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 3 cut(s) 131, 516, 541
BmsI GCATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 103
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 3 cut(s) 131, 516, 541
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 26, 252
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 5, 415
BshFI GGCC 2 cut(s) 89, 102
BsiHKAI GWGCWC 2 cut(s) 334, 523
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 2 cut(s) 89, 102
Bsp1286I GDGCHC 2 cut(s) 334, 523
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 59, 238, 348
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 89, 102
BspCNI CTCAG 2 cut(s) 25, 253
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 3 cut(s) 370, 433, 558
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 3 cut(s) 67, 233, 356
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 59, 238, 348
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 131, 516, 541
Bst4CI ACNGT 4 cut(s) 196, 282, 460, 505
BstC8I GCNNGC 3 cut(s) 120, 177, 561
BstDEI CTNAG 3 cut(s) 12, 261, 335
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 3 cut(s) 62, 241, 351
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 59, 238, 348
BstMWI GCNNNNNNNGC 2 cut(s) 48, 274
BstNI CCWGG 3 cut(s) 131, 516, 541
BstSCI CCNGG 3 cut(s) 129, 514, 539
BstSFI CTRYAG 4 cut(s) 278, 366, 429, 554
BstV1I GCAGC 2 cut(s) 5, 415
BstX2I RGATCY 2 cut(s) 238, 348
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 2 cut(s) 238, 348
BsuRI GGCC 2 cut(s) 89, 102
BtgI CCRYGG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 4 cut(s) 20, 66, 438, 456
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 120, 177, 561
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 8, 101
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 1 cut(s) 477
CviAII CATG 3 cut(s) 146, 209, 287
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 3 cut(s) 12, 261, 335
DpnI GATC 3 cut(s) 61, 240, 350
DpnII GATC 3 cut(s) 59, 238, 348
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 89
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 129, 514, 539
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 149, 212, 290
FaiI YATR 5 cut(s) 93, 147, 210, 234, 288
FatI CATG 3 cut(s) 145, 208, 286
Fnu4HI GCNGC 3 cut(s) 19, 429, 557
Fsp4HI GCNGC 3 cut(s) 19, 429, 557
FspBI CTAG 1 cut(s) 568
GluI GCNGC 3 cut(s) 19, 429, 557
HaeIII GGCC 2 cut(s) 89, 102
HapII CCGG 1 cut(s) 201
Hin1II CATG 3 cut(s) 149, 212, 290
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 2 cut(s) 110, 204
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 109, 139, 415
Hpy188III TCNNGA 3 cut(s) 201, 221, 251
HpyAV CCTTC 3 cut(s) 79, 114, 456
HpyCH4III ACNGT 4 cut(s) 196, 282, 460, 505
HpyCH4V TGCA 5 cut(s) 179, 368, 431, 442, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 274
HpyF3I CTNAG 3 cut(s) 12, 261, 335
Hsp92II CATG 3 cut(s) 149, 212, 290
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 3 cut(s) 59, 238, 348
LmnI GCTCC 4 cut(s) 53, 172, 400, 526
Lsp1109I GCAGC 2 cut(s) 5, 415
LweI GCATC 1 cut(s) 301
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 568
MaeIII GTNAC 3 cut(s) 64, 94, 454
MalI GATC 3 cut(s) 61, 240, 350
MboI GATC 3 cut(s) 59, 238, 348
MboII GAAGA 1 cut(s) 320
MflI RGATCY 2 cut(s) 238, 348
MhlI GDGCHC 2 cut(s) 334, 523
MluCI AATT 3 cut(s) 72, 324, 497
MnlI CCTC 4 cut(s) 21, 71, 258, 377
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 1 cut(s) 471
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 3 cut(s) 131, 516, 541
MvaI CCWGG 3 cut(s) 131, 516, 541
MwoI GCNNNNNNNGC 2 cut(s) 48, 274
NcoI CCATGG 1 cut(s) 145
NdeII GATC 3 cut(s) 59, 238, 348
NlaIII CATG 3 cut(s) 149, 212, 290
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 64, 454
PceI AGGCCT 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 110, 204
PflMI CCANNNNNTGG 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 539
PkrI GCNGC 3 cut(s) 20, 430, 558
Psp6I CCWGG 3 cut(s) 129, 514, 539
PspGI CCWGG 3 cut(s) 129, 514, 539
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 8, 101
PstI CTGCAG 3 cut(s) 370, 433, 558
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 2 cut(s) 238, 348
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 3 cut(s) 19, 429, 557
Sau3AI GATC 3 cut(s) 59, 238, 348
Sau96I GGNCC 2 cut(s) 8, 101
ScrFI CCNGG 3 cut(s) 131, 516, 541
SduI GDGCHC 2 cut(s) 334, 523
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 4 cut(s) 278, 366, 429, 554
SinI GGWCC 1 cut(s) 8
Sse9I AATT 3 cut(s) 72, 324, 497
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 484
SspMI CTAG 1 cut(s) 568
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 129, 514, 539
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 4 cut(s) 196, 282, 460, 505
TaqI TCGA 1 cut(s) 407
TasI AATT 3 cut(s) 72, 324, 497
TfiI GAWTC 2 cut(s) 110, 204
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 4 cut(s) 20, 73, 438, 463
TseFI GTSAC 2 cut(s) 64, 454
TseI GCWGC 3 cut(s) 18, 428, 556
Tsp45I GTSAC 2 cut(s) 64, 454
TspRI CASTG 4 cut(s) 20, 73, 438, 463
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.