Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000177

Physical Location & Seq

Genomic Coordinates Forward (+)

58663851 .. 58666321

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAAGGAAACCTGCGGATAAATTTGCTGCACGCAGCTGGATTTTTCGTGGTGGTTCTTGATTTCTTTTATGGCGACCCTGTGAATCCTGATAATCCTCAATTTGACCGAGATCCTCCTTCCGCTTCAACCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTTGCCGAGGACGTCGCCGTCAACACCGTCGACGACAAGGGCAATTTGGTCTTTCAGTGCCTCATTGACTCGCTGCAGGTCTGCAATTCCAGCTTGGCGGTTTTGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

104

Amino Acids

11.57

Weight (kDa)

4.35

Isoelectric Point (pI)

19.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca	FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica	MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica	Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis	pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis	RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata	RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora	Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa	Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha	Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana	Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	213
Acc36I	ACCTGC	2 cut(s)	21, 265
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	5 cut(s)	16, 123, 169, 189, 296
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	129, 175
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	38, 178, 291
AluI	AGCT	3 cut(s)	38, 178, 291
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	3 cut(s)	28, 35, 271
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	15, 47, 258
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	21, 265
BisI	GCNGC	3 cut(s)	29, 36, 272
BlsI	GCNGC	3 cut(s)	30, 37, 273
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	192, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	192, 204
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	15, 47, 258
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	5 cut(s)	16, 123, 169, 189, 296
BspANI	GGCC	1 cut(s)	197
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	2 cut(s)	21, 265
BspPI	GGATC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	192, 204
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	15, 47, 258
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	2 cut(s)	21, 265
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	196
CviJI	RGCY	4 cut(s)	38, 178, 197, 291
CviKI_1	RGCY	4 cut(s)	38, 178, 197, 291
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	192
FaiI	YATR	1 cut(s)	72
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	29, 36, 272
Fsp4HI	GCNGC	3 cut(s)	29, 36, 272
GluI	GCNGC	3 cut(s)	29, 36, 272
HaeIII	GGCC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	210
HincII	GTYRAC	2 cut(s)	220, 229
HindII	GTYRAC	2 cut(s)	220, 229
HinfI	GANTC	2 cut(s)	85, 266
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	220, 229
Hpy188III	TCNNGA	2 cut(s)	59, 89
Hpy8I	GTNNAC	2 cut(s)	220, 229
Hpy99I	CGWCG	3 cut(s)	215, 230, 233
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	31, 274, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	8 cut(s)	24, 26, 93, 102, 179, 206, 260, 301
Lsp1109I	GCAGC	3 cut(s)	15, 47, 258
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	5 cut(s)	22, 101, 134, 241, 283
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	108, 126, 173, 199, 269
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	30, 37, 273
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	3 cut(s)	29, 36, 272
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	6 cut(s)	15, 40, 180, 213, 279, 293
SfcI	CTRYAG	1 cut(s)	272
SgrDI	CGTCGACG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	22, 101, 134, 241, 283
SsiI	CCGC	5 cut(s)	16, 123, 169, 189, 296
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	138, 228
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	22, 101, 134, 241, 283
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	3 cut(s)	28, 35, 271
TspRI	CASTG	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.