Prupe.1G549400_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000177
Physical Location & Seq
Reverse (-)
44911368 .. 44915141
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G549400.1

Sequence Viewer

Length: 717 bp
ATGGCAGGCCCTCAGTGCTGCTCTAATCCACCAATTCTCAGCCCAAGCTATGGAGTAGACTGTGCTGAAAAACTTGGAGGCCTTAACGTCTACGCCGCTGGCTCCCCTAACTCCAAGCTTGCCATTGTTCTCGTCTCTGATGTTTTTGGATATCGAGCTCCGAATTTGAGGAAGCTTGGCGAAAAAGTGGCAGCTGCAGGATTCTTTGTGGTAGTTCCAAACTTCTTCTATGATGATCCGTTTGTATATGACAATAACAGACCTCTAGCAGTCTGGTTAGAAGATCATGGAACGGATAAAGGATTTGAAGATGCAAAATCAATAATTAATGCTCTTAAAGAGAAAGGTTATTCTGCAATTGGAGCTGCAGGATTCTGTTGGGGTGGCAAGGTCGTGACAGAGCTCGCGAAGTCTGATTTCGTCCAAGCTGCTGTGCTACTACATCCTTCATTTGTTGCTTTGGATGATATTGAGGGGGTTAAAGTTCCCATGGCGGTTCTAGGAGCTGAGATTGATGAATATTCTCCACTGGAACTCTTGAAACAATTTGAGGAGATATTAGCTGCTAAAACTGAGATTGATAGCTATGTGAAGATATTTCCAAAAGCTGAGCATAGTTGGACCGTGAGGTACAATGTCGAAGATGAAGAAGCAGTGAAGCGTGCAGAGGAGGCTCATAACAACATGATTGATTGGTTTTCTAAGCATGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

4.94

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AccI GTMKAC 2 cut(s) 57, 90
AccII CGCG 1 cut(s) 407
AciI CCGC 2 cut(s) 96, 494
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 2 cut(s) 308, 541
Alw21I GWGCWC 2 cut(s) 160, 405
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 7, 79
ApeKI GCWGC 6 cut(s) 18, 191, 194, 365, 428, 563
ApoI RAATTY 1 cut(s) 163
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 8, 621
AvaII GGWCC 1 cut(s) 621
BanII GRGCYC 2 cut(s) 160, 405
Bbv12I GWGCWC 2 cut(s) 160, 405
BbvI GCAGC 6 cut(s) 5, 181, 203, 352, 415, 550
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 2 cut(s) 266, 500
BfmI CTRYAG 2 cut(s) 195, 366
BisI GCNGC 7 cut(s) 19, 96, 192, 195, 366, 429, 564
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 7 cut(s) 20, 97, 193, 196, 367, 430, 565
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 8, 621
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 442, 469
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 5 cut(s) 26, 52, 498, 564, 600
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 2 cut(s) 566, 683
BseXI GCAGC 6 cut(s) 5, 181, 203, 352, 415, 550
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 2 cut(s) 9, 81
BsiHKAI GWGCWC 2 cut(s) 160, 405
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 9, 81
Bsp1286I GDGCHC 2 cut(s) 160, 405
Bsp143I GATC 2 cut(s) 235, 283
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 1 cut(s) 489
Bsp68I TCGCGA 1 cut(s) 407
BspACI CCGC 2 cut(s) 96, 494
BspANI GGCC 2 cut(s) 9, 81
BspCNI CTCAG 5 cut(s) 25, 51, 499, 565, 601
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 2 cut(s) 199, 370
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 534
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 235, 283
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 62, 625
BstC8I GCNNGC 5 cut(s) 7, 100, 120, 405, 663
BstDEI CTNAG 6 cut(s) 12, 38, 507, 573, 609, 702
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 442, 469
BstFNI CGCG 1 cut(s) 407
BstKTI GATC 2 cut(s) 238, 286
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 235, 283
BstMWI GCNNNNNNNGC 3 cut(s) 15, 362, 671
BstNSI RCATGY 1 cut(s) 710
BstSFI CTRYAG 2 cut(s) 195, 366
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 6 cut(s) 5, 181, 203, 352, 415, 550
BsuRI GGCC 2 cut(s) 9, 81
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 2 cut(s) 442, 469
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 20, 527, 660
BtuMI TCGCGA 1 cut(s) 407
Cac8I GCNNGC 5 cut(s) 7, 100, 120, 405, 663
Cfr13I GGNCC 2 cut(s) 8, 621
Csp6I GTAC 1 cut(s) 631
CviAII CATG 4 cut(s) 287, 490, 685, 707
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 6 cut(s) 12, 38, 507, 573, 609, 702
DpnI GATC 2 cut(s) 237, 285
DpnII GATC 2 cut(s) 235, 283
Ecl136II GAGCTC 2 cut(s) 158, 403
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 160, 405
Eco32I GATATC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 621
Eco53kI GAGCTC 2 cut(s) 158, 403
EcoICRI GAGCTC 2 cut(s) 158, 403
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 160, 405
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 290, 493, 688, 710
FatI CATG 4 cut(s) 286, 489, 684, 706
FblI GTMKAC 2 cut(s) 57, 90
Fnu4HI GCNGC 7 cut(s) 19, 96, 192, 195, 366, 429, 564
FokI GGATG 2 cut(s) 429, 476
FriOI GRGCYC 2 cut(s) 160, 405
Fsp4HI GCNGC 7 cut(s) 19, 96, 192, 195, 366, 429, 564
FspBI CTAG 2 cut(s) 266, 500
GluI GCNGC 7 cut(s) 19, 96, 192, 195, 366, 429, 564
HaeIII GGCC 2 cut(s) 9, 81
Hin1II CATG 4 cut(s) 290, 493, 688, 710
HindIII AAGCTT 2 cut(s) 116, 173
HinfI GANTC 2 cut(s) 201, 372
Hpy166II GTNNAC 2 cut(s) 58, 91
Hpy188I TCNGA 3 cut(s) 139, 162, 415
Hpy188III TCNNGA 3 cut(s) 394, 406, 538
Hpy8I GTNNAC 2 cut(s) 58, 91
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 2 cut(s) 62, 625
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 5 cut(s) 197, 314, 356, 368, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 362, 671
HpyF3I CTNAG 6 cut(s) 12, 38, 507, 573, 609, 702
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 290, 493, 688, 710
Kzo9I GATC 2 cut(s) 235, 283
LmnI GCTCC 4 cut(s) 107, 163, 362, 503
LpnPI CCDG 5 cut(s) 84, 183, 259, 354, 515
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 352, 415, 550
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 266, 500
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 394
MalI GATC 2 cut(s) 237, 285
MboI GATC 2 cut(s) 235, 283
MboII GAAGA 6 cut(s) 217, 293, 320, 604, 653, 659
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 2 cut(s) 160, 405
MluCI AATT 5 cut(s) 33, 163, 324, 357, 545
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 9 cut(s) 21, 71, 162, 273, 466, 544, 621, 661, 664
MseI TTAA 5 cut(s) 84, 327, 336, 480, 711
MspA1I CMGCKG 2 cut(s) 98, 194
MunI CAATTG 1 cut(s) 357
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 15, 362, 671
NcoI CCATGG 1 cut(s) 489
NdeII GATC 2 cut(s) 235, 283
NlaIII CATG 4 cut(s) 290, 493, 688, 710
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 394
NruI TCGCGA 1 cut(s) 407
NspI RCATGY 1 cut(s) 710
PceI AGGCCT 1 cut(s) 81
PfeI GAWTC 2 cut(s) 201, 372
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 7 cut(s) 20, 97, 193, 196, 367, 430, 565
PshBI ATTAAT 1 cut(s) 327
Psp124BI GAGCTC 2 cut(s) 160, 405
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 8, 621
PstI CTGCAG 2 cut(s) 199, 370
PvuII CAGCTG 1 cut(s) 194
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SacI GAGCTC 2 cut(s) 160, 405
SaqAI TTAA 5 cut(s) 84, 327, 336, 480, 711
SatI GCNGC 7 cut(s) 19, 96, 192, 195, 366, 429, 564
Sau3AI GATC 2 cut(s) 235, 283
Sau96I GGNCC 2 cut(s) 8, 621
SduI GDGCHC 2 cut(s) 160, 405
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 2 cut(s) 195, 366
SinI GGWCC 1 cut(s) 621
Sse9I AATT 5 cut(s) 33, 163, 324, 357, 545
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 2 cut(s) 96, 494
SspI AATATT 1 cut(s) 521
SspMI CTAG 2 cut(s) 266, 500
SstI GAGCTC 2 cut(s) 160, 405
StuI AGGCCT 1 cut(s) 81
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 62, 625
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 154, 639
TasI AATT 5 cut(s) 33, 163, 324, 357, 545
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 201, 372
Tru1I TTAA 5 cut(s) 84, 327, 336, 480, 711
Tru9I TTAA 5 cut(s) 84, 327, 336, 480, 711
TscAI CASTG 3 cut(s) 20, 534, 660
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 6 cut(s) 18, 191, 194, 365, 428, 563
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 438, 531, 660
TspGWI ACGGA 2 cut(s) 228, 308
TspRI CASTG 3 cut(s) 20, 534, 660
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 621
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 710
XmiI GTMKAC 2 cut(s) 57, 90
XspI CTAG 2 cut(s) 266, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.