RLG00000007846

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
21891226 .. 21893828
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007846

Sequence Viewer

Length: 453 bp
ATGGTGCCTGGCCTTCTTTTTTATAGGAAGCTCGCAGACAAAGTTGCAGCTGGTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTTCAGCTGATGGATCCCATGGTGCCAAGGTTGTAGTTGAACTTGCAAAGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTTCAATGGTCACTGTGGATGATATCAAGGCCGGTTGGGATGGCCGCCTCTTCCTGTATGCTCTCTGCCTCTCTCCACACTGGAGAGTTCTTGTTATATGGGTACGGGGGCCTGCATTTTATGACATGGAACTTGAATGTTATAAGAATATTCGATTGGACGAAGAAGCTATGAAGCCTTCTGAAACTTCTGGAGCTGTTCTTGAACCATTGCAAGGGAAATTGTCACTTGAGAAACAGTACCGTGTGGATCTTATGGTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

5.58

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccB1I GGYRCC 2 cut(s) 4, 125
AciI CCGC 1 cut(s) 232
AclWI GGATC 3 cut(s) 111, 124, 444
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 3 cut(s) 102, 291, 428
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 4 cut(s) 143, 192, 323, 392
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 4 cut(s) 159, 191, 326, 358
AluBI AGCT 6 cut(s) 31, 50, 110, 170, 356, 383
AluI AGCT 6 cut(s) 31, 50, 110, 170, 356, 383
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 3 cut(s) 111, 124, 444
AoxI GGCC 4 cut(s) 10, 216, 229, 296
ApeKI GCWGC 2 cut(s) 47, 170
AspS9I GGNCC 2 cut(s) 70, 296
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 4, 125
BbvI GCAGC 2 cut(s) 59, 157
BccI CCATC 2 cut(s) 107, 221
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 3 cut(s) 48, 171, 232
BlsI GCNGC 3 cut(s) 49, 172, 233
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 296
BmiI GGNNCC 5 cut(s) 6, 72, 118, 127, 297
BmrFI CCNGG 1 cut(s) 9
BpmI CTGGAG 2 cut(s) 289, 399
BpuEI CTTGAG 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 121, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 121, 129
BseGI GGATG 3 cut(s) 184, 211, 232
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 59, 157
BshFI GGCC 4 cut(s) 12, 218, 231, 298
BshNI GGYRCC 2 cut(s) 4, 125
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 4 cut(s) 12, 218, 231, 298
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 116, 436
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 1 cut(s) 232
BspANI GGCC 4 cut(s) 12, 218, 231, 298
BspLI GGNNCC 5 cut(s) 6, 72, 118, 127, 297
BspPI GGATC 3 cut(s) 111, 124, 444
BspT107I GGYRCC 2 cut(s) 4, 125
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 121, 129
BssMI GATC 2 cut(s) 116, 436
BssT1I CCWWGG 2 cut(s) 121, 129
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 202, 426, 431
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 33, 300
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 184, 211, 232
BstKTI GATC 2 cut(s) 119, 439
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 116, 436
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 59, 157
BstX2I RGATCY 2 cut(s) 116, 436
BstYI RGATCY 2 cut(s) 116, 436
BsuRI GGCC 4 cut(s) 12, 218, 231, 298
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 184, 211, 232
BtsIMutI CAGTG 2 cut(s) 198, 265
Cac8I GCNNGC 2 cut(s) 33, 300
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 70, 296
Csp6I GTAC 3 cut(s) 101, 290, 427
CviAII CATG 2 cut(s) 122, 313
CviQI GTAC 3 cut(s) 101, 290, 427
DpnI GATC 2 cut(s) 118, 438
DpnII GATC 2 cut(s) 116, 436
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 121, 129
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 121, 129
ErhI CCWWGG 2 cut(s) 121, 129
FaeI CATG 2 cut(s) 125, 316
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 121, 312
Fnu4HI GCNGC 3 cut(s) 48, 171, 232
FokI GGATG 3 cut(s) 171, 218, 239
Fsp4HI GCNGC 3 cut(s) 48, 171, 232
GluI GCNGC 3 cut(s) 48, 171, 232
GsuI CTGGAG 2 cut(s) 289, 399
HaeIII GGCC 4 cut(s) 12, 218, 231, 298
HapII CCGG 1 cut(s) 219
Hin1II CATG 2 cut(s) 125, 316
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 378, 389
HpyAV CCTTC 4 cut(s) 23, 114, 198, 375
HpyCH4III ACNGT 3 cut(s) 202, 426, 431
HpyCH4V TGCA 4 cut(s) 47, 149, 302, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 125, 316
Kzo9I GATC 2 cut(s) 116, 436
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 21, 36, 87, 164, 232, 253, 254, 312, 363
Lsp1109I GCAGC 2 cut(s) 59, 157
MaeIII GTNAC 3 cut(s) 155, 196, 411
MalI GATC 2 cut(s) 118, 438
MboI GATC 2 cut(s) 116, 436
MboII GAAGA 2 cut(s) 229, 362
MflI RGATCY 2 cut(s) 116, 436
MluCI AATT 1 cut(s) 407
MnlI CCTC 2 cut(s) 245, 266
MseI TTAA 1 cut(s) 447
MspA1I CMGCKG 2 cut(s) 50, 110
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 116, 436
NlaIII CATG 2 cut(s) 125, 316
NlaIV GGNNCC 5 cut(s) 6, 72, 118, 127, 297
NmuCI GTSAC 3 cut(s) 155, 196, 411
PkrI GCNGC 3 cut(s) 49, 172, 233
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 5 cut(s) 6, 72, 118, 127, 297
PspPI GGNCC 2 cut(s) 70, 296
PsuI RGATCY 2 cut(s) 116, 436
PvuII CAGCTG 2 cut(s) 50, 110
RsaI GTAC 3 cut(s) 102, 291, 428
RsaNI GTAC 3 cut(s) 101, 290, 427
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 3 cut(s) 48, 171, 232
Sau3AI GATC 2 cut(s) 116, 436
Sau96I GGNCC 2 cut(s) 70, 296
ScrFI CCNGG 1 cut(s) 9
SetI ASST 8 cut(s) 33, 52, 106, 112, 135, 172, 358, 385
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 407
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 2 cut(s) 121, 129
TaaI ACNGT 3 cut(s) 202, 426, 431
TaqI TCGA 1 cut(s) 340
TasI AATT 1 cut(s) 407
TauI GCSGC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 2 cut(s) 205, 272
TseFI GTSAC 3 cut(s) 155, 196, 411
TseI GCWGC 2 cut(s) 47, 170
Tsp45I GTSAC 3 cut(s) 155, 196, 411
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 2 cut(s) 205, 272
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.