pycom13g15670

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000177
Physical Location & Seq
Reverse (-)
11420429 .. 11422721
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15670.7

Sequence Viewer

Length: 735 bp
ATGTCAGGCCCTCAGTGCTGCTCAAACCATCCGACCCTCAACCCTTCCAGCGGCACCGGCCATGTCGAAAAGCTCGGCGGTCTCGACTCCTATGTCACTGGCTCCCCTGACTCCAAGCTCGCCGTCCTTCTCGTCTCTGACATTTTTGGATTTGAAGCTCCAAACTTGAGGAAGCTGGCTGACAAAGTTGCAGCTGCTGGGTTCTTCGTTGTGGTCCCCGACTTTTTGAACAAAGACCCTTATGTGCCTGAAGATGCCAATAGACCTCTTCCTGTTTGGATAAAAGATCACGGACCGGACAAGGCATTTGAAGATGCAAAGCCAGTTCTTGAAGCTCTAAAAAGCAAAGGTGTTTCTGCAATCGGGGCTGCTGGCTTCTGTTGGGGAGCCAAGGTTGTGGTTGAACTTGCAAAGCACGCCTTAATCCAAGCTGCTGTTCTGTGTCATCCTTCATTTGTCACTGTGGATGATATCAAAAAGGTTAAGGTTCCGATTTCTATACTTGGAGCTGAGATTGATCACATGTCCCCGCCTCAACTCGTGAAACAGTTTGAAGAGGTTTTAACTGCAAATGAGGTTAAGAGCCATGTGAAGATGTTCCCGAAAGTGTCACACGGGTGGACGGTGAGGTACAACGTCGAAGACAAAGCAGCTTGTAAATCTGCCGAGGAGGCTCATCAAGATTTGTTGGAGTGGTTCTTAAAGCATGTCAAGGGAGTGACGTTGTCAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

245

Amino Acids

26.34

Weight (kDa)

6.36

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 51, 78, 530
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 6 cut(s) 155, 229, 311, 332, 404, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 616
AluBI AGCT 9 cut(s) 73, 118, 158, 175, 194, 335, 431, 509, 653
AluI AGCT 9 cut(s) 73, 118, 158, 175, 194, 335, 431, 509, 653
Alw26I GTCTC 2 cut(s) 86, 139
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 6 cut(s) 18, 191, 194, 368, 431, 650
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp700I GAANNNNTTC 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 8, 214, 293
AsuHPI GGTGA 1 cut(s) 637
AvaII GGWCC 2 cut(s) 214, 293
BanI GGYRCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 6 cut(s) 5, 181, 203, 355, 418, 662
BccI CCATC 1 cut(s) 36
BceAI ACGGC 1 cut(s) 107
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 86, 139
BglI GCCNNNNNGGC 1 cut(s) 671
BisI GCNGC 7 cut(s) 19, 52, 192, 195, 369, 432, 651
BlsI GCNGC 7 cut(s) 20, 53, 193, 196, 370, 433, 652
Bme18I GGWCC 2 cut(s) 214, 293
BmgT120I GGNCC 3 cut(s) 8, 214, 293
BmiI GGNNCC 5 cut(s) 55, 103, 216, 388, 489
BmsI GCATC 2 cut(s) 244, 304
BpiI GAAGAC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 390, 666
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 103, 323
BseDI CCNNGG 2 cut(s) 390, 666
BseGI GGATG 3 cut(s) 28, 445, 472
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 26, 501
BseNI ACTGG 2 cut(s) 103, 323
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 6 cut(s) 5, 181, 203, 355, 418, 662
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 9, 60
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 57, 296
BslFI GGGAC 2 cut(s) 200, 511
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 86, 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 200, 511
BsnI GGCC 2 cut(s) 9, 60
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 286, 517
BspACI CCGC 3 cut(s) 51, 78, 530
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 2 cut(s) 25, 502
BspLI GGNNCC 5 cut(s) 55, 103, 216, 388, 489
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 103, 323
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 390, 666
BssMI GATC 2 cut(s) 286, 517
BssSI CACGAG 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 463, 549, 625
Bst6I CTCTTC 2 cut(s) 273, 549
BstC8I GCNNGC 4 cut(s) 120, 177, 373, 417
BstDEI CTNAG 2 cut(s) 12, 510
BstF5I GGATG 3 cut(s) 28, 445, 472
BstKTI GATC 2 cut(s) 289, 520
BstMAI GTCTC 2 cut(s) 86, 139
BstMBI GATC 2 cut(s) 286, 517
BstMWI GCNNNNNNNGC 5 cut(s) 15, 57, 365, 416, 671
BstNSI RCATGY 2 cut(s) 526, 710
BstV1I GCAGC 6 cut(s) 5, 181, 203, 355, 418, 662
BstV2I GAAGAC 1 cut(s) 648
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuRI GGCC 2 cut(s) 9, 60
BtsCI GGATG 3 cut(s) 28, 445, 472
BtsIMutI CAGTG 3 cut(s) 20, 96, 459
Cac8I GCNNGC 4 cut(s) 120, 177, 373, 417
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 8, 214, 293
CpoI CGGWCCG 1 cut(s) 293
Csp6I GTAC 1 cut(s) 631
CspI CGGWCCG 1 cut(s) 293
CviAII CATG 4 cut(s) 62, 523, 587, 707
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 2 cut(s) 12, 510
DpnI GATC 2 cut(s) 288, 519
DpnII GATC 2 cut(s) 286, 517
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 273, 549
EarI CTCTTC 2 cut(s) 273, 549
Eco130I CCWWGG 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 214, 293
Eco57I CTGAAG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 65, 526, 590, 710
FaiI YATR 7 cut(s) 63, 93, 243, 500, 524, 588, 708
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 2 cut(s) 200, 511
FatI CATG 4 cut(s) 61, 522, 586, 706
FauI CCCGC 1 cut(s) 537
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 7 cut(s) 19, 52, 192, 195, 369, 432, 651
FokI GGATG 3 cut(s) 15, 432, 479
Fsp4HI GCNGC 7 cut(s) 19, 52, 192, 195, 369, 432, 651
GluI GCNGC 7 cut(s) 19, 52, 192, 195, 369, 432, 651
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 9, 60
HapII CCGG 2 cut(s) 57, 296
Hin1II CATG 4 cut(s) 65, 526, 590, 710
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 2 cut(s) 57, 296
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 3 cut(s) 33, 139, 492
Hpy188III TCNNGA 5 cut(s) 83, 329, 541, 601, 680
Hpy8I GTNNAC 1 cut(s) 621
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 3 cut(s) 54, 137, 459
HpyCH4III ACNGT 3 cut(s) 463, 549, 625
HpyCH4IV ACGT 2 cut(s) 636, 722
HpyCH4V TGCA 5 cut(s) 191, 317, 359, 410, 569
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 57, 365, 416, 671
HpyF3I CTNAG 2 cut(s) 12, 510
HpySE526I ACGT 2 cut(s) 636, 722
Hsp92II CATG 4 cut(s) 65, 526, 590, 710
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 286, 517
LmnI GCTCC 4 cut(s) 107, 163, 386, 506
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 355, 418, 662
LweI GCATC 2 cut(s) 244, 304
MaeII ACGT 2 cut(s) 636, 722
MaeIII GTNAC 4 cut(s) 94, 457, 609, 718
MalI GATC 2 cut(s) 288, 519
MboI GATC 2 cut(s) 286, 517
MboII GAAGA 7 cut(s) 196, 260, 263, 323, 566, 604, 653
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 2 cut(s) 56, 669
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 5 cut(s) 422, 483, 563, 579, 701
MslI CAYNNNNRTG 1 cut(s) 616
MspA1I CMGCKG 2 cut(s) 51, 194
MspI CCGG 2 cut(s) 57, 296
MwoI GCNNNNNNNGC 5 cut(s) 15, 57, 365, 416, 671
NdeII GATC 2 cut(s) 286, 517
NlaIII CATG 4 cut(s) 65, 526, 590, 710
NlaIV GGNNCC 5 cut(s) 55, 103, 216, 388, 489
NmeAIII GCCGAG 2 cut(s) 54, 691
NmuCI GTSAC 4 cut(s) 94, 457, 609, 718
NspI RCATGY 2 cut(s) 526, 710
OliI CACNNNNGTG 1 cut(s) 616
PciI ACATGT 1 cut(s) 522
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 728
PdmI GAANNNNTTC 1 cut(s) 596
PflFI GACNNNGTC 1 cut(s) 724
PkrI GCNGC 7 cut(s) 20, 53, 193, 196, 370, 433, 652
PleI GAGTC 2 cut(s) 80, 104
PpsI GAGTC 2 cut(s) 80, 104
PscI ACATGT 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 5 cut(s) 55, 103, 216, 388, 489
PspPI GGNCC 3 cut(s) 8, 214, 293
PstNI CAGNNNCTG 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 1 cut(s) 616
Rsr2I CGGWCCG 1 cut(s) 293
RsrII CGGWCCG 1 cut(s) 293
SaqAI TTAA 5 cut(s) 422, 483, 563, 579, 701
SatI GCNGC 7 cut(s) 19, 52, 192, 195, 369, 432, 651
Sau3AI GATC 2 cut(s) 286, 517
Sau96I GGNCC 3 cut(s) 8, 214, 293
SchI GAGTC 2 cut(s) 80, 104
SfaNI GCATC 2 cut(s) 244, 304
SinI GGWCC 2 cut(s) 214, 293
SmiMI CAYNNNNRTG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SsiI CCGC 3 cut(s) 51, 78, 530
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 3 cut(s) 463, 549, 625
TaiI ACGT 2 cut(s) 639, 725
TaqI TCGA 3 cut(s) 66, 84, 639
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 5 cut(s) 422, 483, 563, 579, 701
Tru9I TTAA 5 cut(s) 422, 483, 563, 579, 701
TscAI CASTG 3 cut(s) 20, 103, 466
TseFI GTSAC 4 cut(s) 94, 457, 609, 718
TseI GCWGC 6 cut(s) 18, 191, 194, 368, 431, 650
Tsp45I GTSAC 4 cut(s) 94, 457, 609, 718
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 20, 103, 466
Tth111I GACNNNGTC 1 cut(s) 724
VpaK11BI GGWCC 2 cut(s) 214, 293
XceI RCATGY 2 cut(s) 526, 710
XmnI GAANNNNTTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.