RchiOBHm_Chr4g0418561

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Forward (+)
44009099 .. 44011596
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38854

Sequence Viewer

Length: 726 bp
ATGTCAACTTCTTCAGCTTGCTTCGAGAACCTGCCACCAACACTAAGCTCAACATATGGAGAAGGAACTGTCCTACATTTTGGGGGCCTGAAGAGCTACGTCCCTGGCTCAACTGAATCTAAGCTTGCAGTCCTTCTAGTCTCCAATGTTGTTGGATATGAAAACCCAAACTTAAGGAAACTTGCGGATAAAGTTGCTACAGCTGGATTTTTTGTGGTGGTTCCTGATTTCTTTTATGGCGACCCTATGAATCTTGATAATCCTCAATTCGACCGTGAGGCATGGCATAAAGCCCATAGCGTGGAAAAAGGATACGAGGATGCCAAGCCAGTGCTTGCCGCTCTAAAAAGTCAAGGTGTTTCTGCAATAGGAGCTGCAGGATTTTGCTGGGGAGGGAATGTAGTGGCCAAACTTGCAAAATCTGATGACATTAAGGCCGCTGTGATATTGCATCCTGGCCGGTTAGCAGATGAAGATGTACATGAGGTTAAGGTTCATACTGCAATATTGGGAGCTGAGATTGACAAAAATTCACCCCCAGAACAATTGAAACAATTTGGGGATATTTTATCAGTAAAGTCAGAGTTTGATAGCTTTGTGAAAATATTTCCTGGAGTGGCTCATGGATGGACAATAAGCTACAATGCGGAGGATGAAACTGCAGTCAAGAGTGCCGAAGAGGCTCAATTGGACATGTTAAAATGGTTTACCAAGTATGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

241

Amino Acids

26.11

Weight (kDa)

5.37

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 33 - 239 3.8e-28 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 341
AciI CCGC 4 cut(s) 185, 339, 438, 647
AcoI YGGCCR 2 cut(s) 405, 457
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 1 cut(s) 550
AjnI CCWGG 3 cut(s) 103, 454, 610
AluBI AGCT 9 cut(s) 17, 48, 96, 124, 203, 374, 515, 594, 639
AluI AGCT 9 cut(s) 17, 48, 96, 124, 203, 374, 515, 594, 639
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 4 cut(s) 85, 405, 435, 457
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 525
BalI TGGCCA 1 cut(s) 407
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 621
BciT130I CCWGG 3 cut(s) 105, 456, 612
BciVI GTATCC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 3 cut(s) 198, 375, 660
BfrI CTTAAG 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 39
BfuI GTATCC 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 680
BisI GCNGC 3 cut(s) 339, 375, 438
BlsI GCNGC 3 cut(s) 340, 376, 439
Bme1390I CCNGG 3 cut(s) 105, 456, 612
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 86, 222
BmrFI CCNGG 3 cut(s) 105, 456, 612
BmsI GCATC 2 cut(s) 310, 460
BpmI CTGGAG 1 cut(s) 633
BsaJI CCNNGG 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 3 cut(s) 105, 456, 612
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 4 cut(s) 325, 451, 632, 658
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 4 cut(s) 87, 407, 437, 459
BsiEI CGRYCG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 4 cut(s) 87, 407, 437, 459
Bsp1407I TGTACA 1 cut(s) 478
BspACI CCGC 4 cut(s) 185, 339, 438, 647
BspANI GGCC 4 cut(s) 87, 407, 437, 459
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 86, 222
BspMAI CTGCAG 2 cut(s) 379, 664
BspMI ACCTGC 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 478
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 105, 456, 612
Bst4CI ACNGT 2 cut(s) 70, 275
Bst6I CTCTTC 2 cut(s) 86, 672
BstAFI CTTAAG 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 3 cut(s) 19, 126, 336
BstDEI CTNAG 3 cut(s) 44, 120, 516
BstF5I GGATG 4 cut(s) 325, 451, 632, 658
BstMAI GTCTC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 4 cut(s) 93, 371, 413, 680
BstNI CCWGG 3 cut(s) 105, 456, 612
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 3 cut(s) 103, 454, 610
BstSFI CTRYAG 3 cut(s) 198, 375, 660
BstV1I GCAGC 1 cut(s) 361
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 4 cut(s) 87, 407, 437, 459
BtsCI GGATG 4 cut(s) 325, 451, 632, 658
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 19, 126, 336
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 479
CviAII CATG 4 cut(s) 282, 482, 623, 694
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 3 cut(s) 44, 120, 516
EaeI YGGCCR 2 cut(s) 405, 457
Eam1104I CTCTTC 2 cut(s) 86, 672
EarI CTCTTC 2 cut(s) 86, 672
Eco57I CTGAAG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 3 cut(s) 103, 454, 610
FaeI CATG 4 cut(s) 285, 485, 626, 697
FaqI GGGAC 1 cut(s) 86
FatI CATG 4 cut(s) 281, 481, 622, 693
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 339, 375, 438
FokI GGATG 4 cut(s) 332, 438, 639, 665
Fsp4HI GCNGC 3 cut(s) 339, 375, 438
FspBI CTAG 1 cut(s) 137
GluI GCNGC 3 cut(s) 339, 375, 438
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 4 cut(s) 87, 407, 437, 459
HapII CCGG 1 cut(s) 460
Hin1II CATG 4 cut(s) 285, 485, 626, 697
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 116, 250
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 525
Hpy166II GTNNAC 2 cut(s) 6, 708
Hpy188I TCNGA 2 cut(s) 424, 583
Hpy188III TCNNGA 4 cut(s) 25, 224, 254, 667
Hpy8I GTNNAC 2 cut(s) 6, 708
HpyAV CCTTC 2 cut(s) 56, 143
HpyCH4III ACNGT 2 cut(s) 70, 275
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 7 cut(s) 128, 365, 377, 416, 451, 503, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 371, 413, 680
HpyF3I CTNAG 3 cut(s) 44, 120, 516
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 4 cut(s) 285, 485, 626, 697
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 371, 512
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 2 cut(s) 310, 460
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 99
MbiI CCGCTC 1 cut(s) 341
MboII GAAGA 4 cut(s) 3, 103, 485, 689
MfeI CAATTG 2 cut(s) 545, 686
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 5 cut(s) 266, 529, 545, 554, 686
MluNI TGGCCA 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 271, 273, 310, 386, 478, 643, 673
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 4 cut(s) 173, 432, 489, 698
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 203, 440
MspCI CTTAAG 1 cut(s) 172
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 105, 456, 612
MunI CAATTG 2 cut(s) 545, 686
MvaI CCWGG 3 cut(s) 105, 456, 612
MwoI GCNNNNNNNGC 4 cut(s) 93, 371, 413, 680
NdeI CATATG 1 cut(s) 55
NlaIII CATG 4 cut(s) 285, 485, 626, 697
NlaIV GGNNCC 2 cut(s) 86, 222
NspI RCATGY 1 cut(s) 697
PciI ACATGT 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 116, 250
PflMI CCANNNNNTGG 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 3 cut(s) 340, 376, 439
PscI ACATGT 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 103, 454, 610
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 3 cut(s) 103, 454, 610
PspN4I GGNNCC 2 cut(s) 86, 222
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 2 cut(s) 379, 664
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 4 cut(s) 173, 432, 489, 698
SatI GCNGC 3 cut(s) 339, 375, 438
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 105, 456, 612
SfaNI GCATC 2 cut(s) 310, 460
SfcI CTRYAG 3 cut(s) 198, 375, 660
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 5 cut(s) 266, 529, 545, 554, 686
SsiI CCGC 4 cut(s) 185, 339, 438, 647
SspI AATATT 2 cut(s) 507, 606
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 103, 454, 610
TaaI ACNGT 2 cut(s) 70, 275
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 24, 270
TasI AATT 5 cut(s) 266, 529, 545, 554, 686
TatI WGTACW 1 cut(s) 478
TauI GCSGC 2 cut(s) 341, 440
TfiI GAWTC 2 cut(s) 116, 250
Tru1I TTAA 4 cut(s) 173, 432, 489, 698
Tru9I TTAA 4 cut(s) 173, 432, 489, 698
TscAI CASTG 1 cut(s) 336
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 5 cut(s) 174, 263, 485, 486, 669
TspRI CASTG 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 172
XapI RAATTY 1 cut(s) 529
XceI RCATGY 1 cut(s) 697
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.