RLG00000007843

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000177
Physical Location & Seq
Reverse (-)
21874463 .. 21881231
6769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007843

Sequence Viewer

Length: 729 bp
ATGGTGCCTGGCCTTCTTTTTTACAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCGCCAGCTGATGGATCCCATGGCGGTCTACCTACATGGCTGAAAAGTCATGAAGCGGTACAGTATTTGATATACGGATCCAAGGTTGTAGTTGAACTTGCAAAGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTTCTTTTGTCACTGTGGATGATATCAAGGAGCAGAGAACAAATCCACAGAGGCAAACTCCTCCTCTGTACACCAAAGCTGTGAAGGCTTCTGAAACTTCTGGAGCTGTTCTTGAACCATTGCAAGGGATATTTGTTTTTGAGAAACAGAAGCTCGCAGACAAAGTTGCAGCTGCTGGGTTCTTTGTTGTGGTACCTGACTTCTTTTATGGAGATGCTTTTCCTGGTGATGCTGGACCAGTTGGAAACTCTTCTGCTCTACCTATTTGGTTAAAGACACATTTACCGGTTGCTAAGGCTGCGGTTGAACTTGCAAAGTATGATGACCTTCTCCATGCTGCTGTCTTGTGCCATCCTTCATTCGTCAGTGTGGACGATTTCAAGGGTTGGTCCGATCTGTGGGGGTTATTGGTCAAAGATGTGGTTGCTAAGAGGCTTGTCACGGCACTAAATGTGGGTGAAAACAGTGTGGTGGATTACTTACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

243

Amino Acids

26.25

Weight (kDa)

5.84

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 2 cut(s) 4, 433
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 130
AciI CCGC 4 cut(s) 104, 126, 158, 542
AclWI GGATC 4 cut(s) 111, 124, 174, 187
AfaI GTAC 4 cut(s) 102, 162, 311, 435
AfiI CCNNNNNNNGG 3 cut(s) 113, 365, 639
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 4 cut(s) 197, 356, 548, 622
AjnI CCWGG 2 cut(s) 7, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 8 cut(s) 31, 50, 110, 224, 320, 347, 394, 413
AluI AGCT 8 cut(s) 31, 50, 110, 224, 320, 347, 394, 413
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 4 cut(s) 111, 124, 174, 187
AlwNI CAGNNNCTG 2 cut(s) 53, 416
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 7 cut(s) 47, 50, 224, 410, 413, 539, 578
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 490
Asp718I GGTACC 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 70, 476, 630
AsuHPI GGTGA 3 cut(s) 221, 479, 710
AvaII GGWCC 3 cut(s) 70, 476, 630
BamHI GGATCC 2 cut(s) 116, 179
BanI GGYRCC 2 cut(s) 4, 433
BbvI GCAGC 7 cut(s) 37, 59, 211, 400, 422, 526, 565
BccI CCATC 2 cut(s) 107, 600
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 2 cut(s) 9, 465
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 7 cut(s) 48, 51, 225, 411, 414, 540, 579
BlsI GCNGC 7 cut(s) 49, 52, 226, 412, 415, 541, 580
Bme1390I CCNGG 2 cut(s) 9, 465
Bme18I GGWCC 3 cut(s) 70, 476, 630
BmgT120I GGNCC 3 cut(s) 70, 476, 630
BmiI GGNNCC 5 cut(s) 6, 72, 118, 181, 435
BmrFI CCNGG 2 cut(s) 9, 465
BmsI GCATC 2 cut(s) 445, 460
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 121, 183
BsaWI WCCGGW 1 cut(s) 526
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 365, 639
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 9, 465
BseDI CCNNGG 2 cut(s) 121, 183
BseGI GGATG 3 cut(s) 238, 265, 592
BseLI CCNNNNNNNGG 3 cut(s) 113, 365, 639
BseMI GCAATG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 2 cut(s) 291, 294
BseXI GCAGC 7 cut(s) 37, 59, 211, 400, 422, 526, 565
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 4, 433
BshTI ACCGGT 1 cut(s) 526
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 113, 365, 639
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 3 cut(s) 116, 179, 634
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 4 cut(s) 104, 126, 158, 542
BspANI GGCC 1 cut(s) 12
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 5 cut(s) 6, 72, 118, 181, 435
BspPI GGATC 4 cut(s) 111, 124, 174, 187
BspT107I GGYRCC 2 cut(s) 4, 433
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 121, 183
BssMI GATC 3 cut(s) 116, 179, 634
BssT1I CCWWGG 2 cut(s) 121, 183
Bst2UI CCWGG 2 cut(s) 9, 465
Bst4CI ACNGT 3 cut(s) 165, 256, 707
Bst6I CTCTTC 1 cut(s) 496
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 4 cut(s) 33, 55, 108, 396
BstDEI CTNAG 2 cut(s) 534, 669
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 238, 265, 592
BstKTI GATC 3 cut(s) 119, 182, 637
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 3 cut(s) 116, 179, 634
BstMWI GCNNNNNNNGC 3 cut(s) 233, 326, 539
BstNI CCWGG 2 cut(s) 9, 465
BstSCI CCNGG 2 cut(s) 7, 463
BstV1I GCAGC 7 cut(s) 37, 59, 211, 400, 422, 526, 565
BstX2I RGATCY 2 cut(s) 116, 179
BstYI RGATCY 2 cut(s) 116, 179
BsuRI GGCC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 238, 265, 592
BtsIMutI CAGTG 3 cut(s) 252, 613, 712
Cac8I GCNNGC 4 cut(s) 33, 55, 108, 396
CaiI CAGNNNCTG 2 cut(s) 53, 416
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 70, 476, 630
Csp6I GTAC 4 cut(s) 101, 161, 310, 434
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 4 cut(s) 122, 138, 152, 575
CviQI GTAC 4 cut(s) 101, 161, 310, 434
DdeI CTNAG 2 cut(s) 534, 669
DpnI GATC 3 cut(s) 118, 181, 636
DpnII GATC 3 cut(s) 116, 179, 634
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 121, 183
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 3 cut(s) 70, 476, 630
EcoRII CCWGG 2 cut(s) 7, 463
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 121, 183
ErhI CCWWGG 2 cut(s) 121, 183
FaeI CATG 4 cut(s) 125, 141, 155, 578
FaiI YATR 9 cut(s) 87, 99, 123, 139, 153, 175, 450, 561, 576
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 121, 137, 151, 574
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 7 cut(s) 48, 51, 225, 411, 414, 540, 579
FokI GGATG 3 cut(s) 225, 272, 579
Fsp4HI GCNGC 7 cut(s) 48, 51, 225, 411, 414, 540, 579
GluI GCNGC 7 cut(s) 48, 51, 225, 411, 414, 540, 579
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 527
Hin1II CATG 4 cut(s) 125, 141, 155, 578
HpaII CCGG 1 cut(s) 527
HphI GGTGA 3 cut(s) 221, 479, 710
Hpy166II GTNNAC 3 cut(s) 131, 312, 613
Hpy188I TCNGA 2 cut(s) 334, 634
Hpy188III TCNNGA 3 cut(s) 152, 342, 353
Hpy8I GTNNAC 3 cut(s) 131, 312, 613
HpyAV CCTTC 5 cut(s) 23, 252, 319, 578, 606
HpyCH4III ACNGT 3 cut(s) 165, 256, 707
HpyCH4V TGCA 5 cut(s) 47, 203, 364, 410, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 326, 539
HpyF3I CTNAG 2 cut(s) 534, 669
Hsp92II CATG 4 cut(s) 125, 141, 155, 578
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 3 cut(s) 116, 179, 634
LmnI GCTCC 2 cut(s) 271, 344
Lsp1109I GCAGC 7 cut(s) 37, 59, 211, 400, 422, 526, 565
LweI GCATC 2 cut(s) 445, 460
MaeIII GTNAC 3 cut(s) 209, 250, 679
MalI GATC 3 cut(s) 118, 181, 636
MboI GATC 3 cut(s) 116, 179, 634
MboII GAAGA 1 cut(s) 483
MflI RGATCY 2 cut(s) 116, 179
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 4 cut(s) 285, 312, 315, 666
MroXI GAANNNNTTC 1 cut(s) 490
MseI TTAA 1 cut(s) 512
MspA1I CMGCKG 3 cut(s) 50, 110, 413
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 2 cut(s) 9, 465
MvaI CCWGG 2 cut(s) 9, 465
MwoI GCNNNNNNNGC 3 cut(s) 233, 326, 539
NcoI CCATGG 1 cut(s) 121
NdeII GATC 3 cut(s) 116, 179, 634
NlaIII CATG 4 cut(s) 125, 141, 155, 578
NlaIV GGNNCC 5 cut(s) 6, 72, 118, 181, 435
NmuCI GTSAC 3 cut(s) 209, 250, 679
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 7 cut(s) 49, 52, 226, 412, 415, 541, 580
Psp6I CCWGG 2 cut(s) 7, 463
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 7, 463
PspN4I GGNNCC 5 cut(s) 6, 72, 118, 181, 435
PspPI GGNCC 3 cut(s) 70, 476, 630
PstNI CAGNNNCTG 2 cut(s) 53, 416
PsuI RGATCY 2 cut(s) 116, 179
PvuII CAGCTG 3 cut(s) 50, 110, 413
RsaI GTAC 4 cut(s) 102, 162, 311, 435
RsaNI GTAC 4 cut(s) 101, 161, 310, 434
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 7 cut(s) 48, 51, 225, 411, 414, 540, 579
Sau3AI GATC 3 cut(s) 116, 179, 634
Sau96I GGNCC 3 cut(s) 70, 476, 630
ScrFI CCNGG 2 cut(s) 9, 465
SfaNI GCATC 2 cut(s) 445, 460
SinI GGWCC 3 cut(s) 70, 476, 630
SsiI CCGC 4 cut(s) 104, 126, 158, 542
StyD4I CCNGG 2 cut(s) 7, 463
StyI CCWWGG 2 cut(s) 121, 183
TaaI ACNGT 3 cut(s) 165, 256, 707
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 3 cut(s) 259, 613, 712
TseFI GTSAC 3 cut(s) 209, 250, 679
TseI GCWGC 7 cut(s) 47, 50, 224, 410, 413, 539, 578
Tsp45I GTSAC 3 cut(s) 209, 250, 679
TspDTI ATGAA 2 cut(s) 168, 588
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 3 cut(s) 259, 613, 712
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 3 cut(s) 70, 476, 630
XmiI GTMKAC 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.