RchiOBHm_Chr4g0418591

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
44036122 .. 44037546
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38857

Sequence Viewer

Length: 483 bp
ATGTCAGGCCCTCAGTGCTGCTCGAACCCACCGACCCTGAACCCAACCAGTGGATCCGGCCACATTGAGAAGCTTGGTGGTCTCGACTCCTATCTCACTGGCTCCCCTGACTCCAAGCTTGCCATTGTTCTTGTCTCCGACGTTTTTGGTACGCACGGCACCCACCACTTCAAAGTGACAACATCTAATCTTTTTCCATTTGGTTTAGTACTCTGCTTTTGTTCACTATCTTATTTGAGTTATGTTGCTGATAGTGAAATTGATGGTCTTTGTGTGCTTTTGTCTCTTTGGTTTGGGTATGATGCTCCAAACTTGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTCCAGCTGATGGATCCTGGGACTCTCTACCTACTTGGCTGAAAGGTCATGGACCGGTAAAGTTCTTGTATTTTGATACGGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.22

Weight (kDa)

4.86

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 50, 404
AclWI GGATC 4 cut(s) 48, 61, 402, 415
AcoI YGGCCR 1 cut(s) 58
AfaI GTAC 3 cut(s) 151, 210, 393
AfiI CCNNNNNNNGG 2 cut(s) 50, 404
AgeI ACCGGT 1 cut(s) 448
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 5 cut(s) 73, 118, 322, 341, 401
AluI AGCT 5 cut(s) 73, 118, 322, 341, 401
Alw26I GTCTC 4 cut(s) 86, 139, 288, 375
AlwI GGATC 4 cut(s) 48, 61, 402, 415
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 3 cut(s) 18, 338, 341
AsiGI ACCGGT 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 8, 361, 446
AvaII GGWCC 2 cut(s) 361, 446
BamHI GGATCC 2 cut(s) 53, 407
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 5, 328, 350
BccI CCATC 2 cut(s) 257, 398
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 86, 139, 288, 375
BisI GCNGC 3 cut(s) 19, 339, 342
BlsI GCNGC 3 cut(s) 20, 340, 343
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 2 cut(s) 361, 446
BmgT120I GGNCC 3 cut(s) 8, 361, 446
BmiI GGNNCC 5 cut(s) 55, 103, 160, 363, 409
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 292, 466
BpmI CTGGAG 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 334
BsaI GGTCTC 2 cut(s) 86, 375
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 404
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 48, 103
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 50, 404
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 48, 103
BseXI GCAGC 3 cut(s) 5, 328, 350
BshFI GGCC 2 cut(s) 9, 60
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 448
BsiSI CCGG 2 cut(s) 57, 449
BslFI GGGAC 2 cut(s) 347, 428
BslI CCNNNNNNNGG 2 cut(s) 50, 404
BsmAI GTCTC 4 cut(s) 86, 139, 288, 375
BsmFI GGGAC 2 cut(s) 347, 428
BsnI GGCC 2 cut(s) 9, 60
Bso31I GGTCTC 2 cut(s) 86, 375
Bsp143I GATC 2 cut(s) 53, 407
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 5 cut(s) 55, 103, 160, 363, 409
BspPI GGATC 4 cut(s) 48, 61, 402, 415
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 2 cut(s) 86, 375
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 48, 103
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 53, 407
Bst2UI CCWGG 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 120, 324, 346
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 481
BstKTI GATC 2 cut(s) 56, 410
BstMAI GTCTC 4 cut(s) 86, 139, 288, 375
BstMBI GATC 2 cut(s) 53, 407
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 5, 328, 350
BstX2I RGATCY 2 cut(s) 53, 407
BstYI RGATCY 2 cut(s) 53, 407
BsuRI GGCC 2 cut(s) 9, 60
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 20, 55, 96
Cac8I GCNNGC 3 cut(s) 120, 324, 346
CaiI CAGNNNCTG 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 3 cut(s) 8, 361, 446
Csp6I GTAC 3 cut(s) 150, 209, 392
CspAI ACCGGT 1 cut(s) 448
CviAII CATG 1 cut(s) 443
CviQI GTAC 3 cut(s) 150, 209, 392
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 55, 409
DpnII GATC 2 cut(s) 53, 407
EaeI YGGCCR 1 cut(s) 58
Eco31I GGTCTC 2 cut(s) 86, 375
Eco47I GGWCC 2 cut(s) 361, 446
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 1 cut(s) 446
FaiI YATR 6 cut(s) 243, 300, 378, 390, 444, 481
FaqI GGGAC 2 cut(s) 347, 428
FatI CATG 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 19, 339, 342
Fsp4HI GCNGC 3 cut(s) 19, 339, 342
GluI GCNGC 3 cut(s) 19, 339, 342
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 2 cut(s) 9, 60
HapII CCGG 2 cut(s) 57, 449
Hin1II CATG 1 cut(s) 446
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 3 cut(s) 86, 110, 416
HpaII CCGG 2 cut(s) 57, 449
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 338, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 446
Kzo9I GATC 2 cut(s) 53, 407
LmnI GCTCC 2 cut(s) 107, 310
Lsp1109I GCAGC 3 cut(s) 5, 328, 350
LweI GCATC 2 cut(s) 292, 466
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 175
MalI GATC 2 cut(s) 55, 409
MboI GATC 2 cut(s) 53, 407
MflI RGATCY 2 cut(s) 53, 407
MluCI AATT 1 cut(s) 258
MlyI GAGTC 3 cut(s) 80, 104, 410
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 3 cut(s) 21, 309, 405
Mph1103I ATGCAT 1 cut(s) 481
MspA1I CMGCKG 2 cut(s) 341, 401
MspI CCGG 2 cut(s) 57, 449
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 2 cut(s) 53, 407
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 5 cut(s) 55, 103, 160, 363, 409
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PflMI CCANNNNNTGG 2 cut(s) 50, 404
PinAI ACCGGT 1 cut(s) 448
PkrI GCNGC 3 cut(s) 20, 340, 343
PleI GAGTC 3 cut(s) 80, 104, 410
PpsI GAGTC 3 cut(s) 80, 104, 410
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 5 cut(s) 55, 103, 160, 363, 409
PspPI GGNCC 3 cut(s) 8, 361, 446
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 2 cut(s) 53, 407
PvuII CAGCTG 2 cut(s) 341, 401
RsaI GTAC 3 cut(s) 151, 210, 393
RsaNI GTAC 3 cut(s) 150, 209, 392
SatI GCNGC 3 cut(s) 19, 339, 342
Sau3AI GATC 2 cut(s) 53, 407
Sau96I GGNCC 3 cut(s) 8, 361, 446
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 3 cut(s) 80, 104, 410
ScrFI CCNGG 1 cut(s) 412
SetI ASST 9 cut(s) 75, 120, 144, 324, 343, 397, 403, 427, 442
SfaNI GCATC 2 cut(s) 292, 466
SinI GGWCC 2 cut(s) 361, 446
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 410
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 23, 84
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 208
TscAI CASTG 3 cut(s) 20, 55, 103
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 18, 338, 341
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 3 cut(s) 20, 55, 103
Van91I CCANNNNNTGG 2 cut(s) 50, 404
VpaK11BI GGWCC 2 cut(s) 361, 446
ZrmI AGTACT 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.