Rh5AG059400

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000177
Physical Location & Seq
Reverse (-)
5089489 .. 5091596
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG059400.1

Sequence Viewer

Length: 393 bp
ATGCATGATGTCCTTAAACTAGCTTCCCATTTCCATTCCATTACTTTTACTTATGTTTGGCCACAGACTTGCAGTCATCTTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGAGTTGCTCCAAAATGGAAGGAAACCTGCGGATAAAGTTGCTGCAACTGGATTTTTCGTGGTTCCCGATTTCTTTTATGGTGACCCTGTGAATCTTGATAATCCTCAATTCGACCGAGAGTCCTGGTTTAAAACTCATAGCAAGAACGCAGGCTCAAGCGAAATTTTCCGCAAGCAGAGCCTGGAAAATTGCAATTTGGCAACCAGTGTCGGTAATGCACATATCAGGACTAAAGTTTCTGATGTTCCTGTAAATTTCACTATTGCAGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

130

Amino Acids

14.58

Weight (kDa)

9.0

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 151, 374
AciI CCGC 2 cut(s) 146, 286
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 2 cut(s) 279, 370
AhdI GACNNNNNGTC 2 cut(s) 72, 235
AjnI CCWGG 2 cut(s) 239, 297
AluBI AGCT 2 cut(s) 23, 103
AluI AGCT 2 cut(s) 23, 103
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 279, 370
AsuHPI GGTGA 1 cut(s) 209
BalI TGGCCA 1 cut(s) 61
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 241, 299
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 2 cut(s) 151, 374
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 241, 299
BmeRI GACNNNNNGTC 2 cut(s) 72, 235
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 241, 299
BpuEI CTTGAG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 169, 321
BseBI CCWGG 2 cut(s) 241, 299
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 169, 321
BseXI GCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 61
BspACI CCGC 2 cut(s) 146, 286
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 180
BspMI ACCTGC 2 cut(s) 151, 374
BsrI ACTGG 2 cut(s) 169, 321
Bst2UI CCWGG 2 cut(s) 241, 299
BstC8I GCNNGC 3 cut(s) 105, 268, 290
BstDEI CTNAG 1 cut(s) 117
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 95
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 2 cut(s) 241, 299
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 239, 297
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 2 cut(s) 151, 374
Cac8I GCNNGC 3 cut(s) 105, 268, 290
CaiI CAGNNNCTG 1 cut(s) 298
CviAII CATG 1 cut(s) 5
CviJI RGCY 6 cut(s) 23, 61, 88, 103, 270, 297
CviKI_1 RGCY 6 cut(s) 23, 61, 88, 103, 270, 297
DdeI CTNAG 1 cut(s) 117
DraI TTTAAA 1 cut(s) 247
DriI GACNNNNNGTC 2 cut(s) 72, 235
EaeI YGGCCR 1 cut(s) 59
Eam1105I GACNNNNNGTC 2 cut(s) 72, 235
Eco91I GGTNACC 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 239, 297
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 5 cut(s) 6, 54, 195, 255, 339
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 85
Hin1II CATG 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 208, 236
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 118, 358
Hpy188III TCNNGA 3 cut(s) 182, 212, 343
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 6 cut(s) 4, 72, 161, 309, 335, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 8
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 5 cut(s) 224, 279, 304, 310, 370
MluNI TGGCCA 1 cut(s) 61
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 1 cut(s) 231
Mox20I TGGCCA 1 cut(s) 61
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 61
MseI TTAA 2 cut(s) 15, 246
Msp20I TGGCCA 1 cut(s) 61
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 241, 299
MvaI CCWGG 2 cut(s) 241, 299
MwoI GCNNNNNNNGC 1 cut(s) 294
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 239, 297
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 239, 297
PspN4I GGNNCC 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 298
SaqAI TTAA 2 cut(s) 15, 246
SatI GCNGC 1 cut(s) 159
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 241, 299
SetI ASST 4 cut(s) 25, 105, 145, 388
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 5 cut(s) 224, 279, 304, 310, 370
SsiI CCGC 2 cut(s) 146, 286
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 239, 297
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 246
TasI AATT 5 cut(s) 224, 279, 304, 310, 370
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 15, 246
Tru9I TTAA 2 cut(s) 15, 246
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 197
TspRI CASTG 1 cut(s) 328
XapI RAATTY 2 cut(s) 279, 370
XspI CTAG 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.