Rh6CG346100

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000177
Physical Location & Seq
Reverse (-)
53639830 .. 53653873
14044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG346100.1

Sequence Viewer

Length: 507 bp
ATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCACCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACATCTACGGCAAAGTAGTTGCGGAGCTATCAAAGGGGTATTACACTAAGGCTGCAGTTTTGTTACACCCTTACAATGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACCTCACTCCACCCGAACTCACGAAACAGTTTAAGGAAGCTTTATCCACTAATAAGTTGCTAGCATTACAAGAAAAGATGATAATTTACAGGCGATTTACAGCAGTACCTATGTGCCACTCCGCTGCACTTCAATGCCTTATTATCGAATGCCCTATGAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

168

Amino Acids

18.26

Weight (kDa)

8.97

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 221, 299, 462
AclWI GGATC 1 cut(s) 127
AfaI GTAC 2 cut(s) 24, 447
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 145, 473
AhdI GACNNNNNGTC 1 cut(s) 39
AluBI AGCT 4 cut(s) 116, 178, 226, 380
AluI AGCT 4 cut(s) 116, 178, 226, 380
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 160
ApeKI GCWGC 2 cut(s) 251, 464
AspS9I GGNCC 2 cut(s) 68, 161
AsuNHI GCTAGC 1 cut(s) 400
AvaII GGWCC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 109
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 238, 451
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 2 cut(s) 252, 465
BlsI GCNGC 2 cut(s) 253, 466
Bme18I GGWCC 1 cut(s) 68
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 68, 161
BmiI GGNNCC 1 cut(s) 106
BmtI GCTAGC 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 238, 451
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 2 cut(s) 149, 162
BsiHKAI GWGCWC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 2 cut(s) 149, 162
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 3 cut(s) 221, 299, 462
BspANI GGCC 2 cut(s) 149, 162
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 404
BspPI GGATC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 163
BssMI GATC 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 180, 402
BstDEI CTNAG 2 cut(s) 109, 246
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 238, 451
Bsu36I CCTNAGG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 149, 162
Cac8I GCNNGC 2 cut(s) 180, 402
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 68, 161
Csp6I GTAC 2 cut(s) 23, 446
CviAII CATG 1 cut(s) 20
CviJI RGCY 9 cut(s) 116, 141, 149, 162, 178, 226, 251, 317, 380
CviKI_1 RGCY 9 cut(s) 116, 141, 149, 162, 178, 226, 251, 317, 380
CviQI GTAC 2 cut(s) 23, 446
DdeI CTNAG 2 cut(s) 109, 246
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 109
FaeI CATG 1 cut(s) 23
FaiI YATR 6 cut(s) 21, 153, 185, 320, 452, 497
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 252, 465
Fsp4HI GCNGC 2 cut(s) 252, 465
FspBI CTAG 1 cut(s) 401
GluI GCNGC 2 cut(s) 252, 465
HaeIII GGCC 2 cut(s) 149, 162
Hin1II CATG 1 cut(s) 23
HindIII AAGCTT 2 cut(s) 176, 378
HinfI GANTC 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 111, 284, 361
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 139, 174
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 46, 52, 254, 467
HpyF3I CTNAG 2 cut(s) 109, 246
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 82, 113, 223
LpnPI CCDG 5 cut(s) 51, 96, 102, 144, 415
Lsp1109I GCAGC 2 cut(s) 238, 451
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 4 cut(s) 31, 154, 261, 277
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 332, 423
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 5 cut(s) 81, 118, 131, 200, 353
MseI TTAA 6 cut(s) 99, 129, 294, 303, 372, 505
MslI CAYNNNNRTG 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 464
Mva1269I GAATGC 1 cut(s) 494
NdeII GATC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 31, 277
NspI RCATGY 1 cut(s) 23
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 494
PkrI GCNGC 2 cut(s) 253, 466
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 68, 161
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 2 cut(s) 24, 447
RsaNI GTAC 2 cut(s) 23, 446
RseI CAYNNNNRTG 1 cut(s) 472
SaqAI TTAA 6 cut(s) 99, 129, 294, 303, 372, 505
SatI GCNGC 2 cut(s) 252, 465
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 2 cut(s) 68, 161
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 1 cut(s) 87
SetI ASST 9 cut(s) 61, 99, 110, 118, 180, 228, 345, 382, 451
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 472
Sse9I AATT 2 cut(s) 332, 423
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 3 cut(s) 221, 299, 462
SspMI CTAG 1 cut(s) 401
StuI AGGCCT 1 cut(s) 149
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 486
TasI AATT 2 cut(s) 332, 423
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 6 cut(s) 99, 129, 294, 303, 372, 505
Tru9I TTAA 6 cut(s) 99, 129, 294, 303, 372, 505
TseFI GTSAC 2 cut(s) 31, 277
TseI GCWGC 2 cut(s) 251, 464
Tsp45I GTSAC 2 cut(s) 31, 277
TspGWI ACGGA 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.