Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AatII | GACGTC | 1 cut(s) | 339 |
| Acc36I | ACCTGC | 1 cut(s) | 391 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 133 |
| AccBSI | CCGCTC | 1 cut(s) | 78 |
| AccI | GTMKAC | 1 cut(s) | 354 |
| AccII | CGCG | 2 cut(s) | 117, 119 |
| AccIII | TCCGGA | 1 cut(s) | 72 |
| AciI | CCGC | 8 cut(s) | 78, 115, 119, 152, 249, 295, 315, 422 |
| AcyI | GRCGYC | 1 cut(s) | 336 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 133, 331 |
| AgsI | TTSAA | 2 cut(s) | 255, 301 |
| AjnI | CCWGG | 1 cut(s) | 318 |
| AluBI | AGCT | 4 cut(s) | 34, 191, 304, 417 |
| AluI | AGCT | 4 cut(s) | 34, 191, 304, 417 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 37 |
| Aor13HI | TCCGGA | 1 cut(s) | 72 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 2 cut(s) | 31, 397 |
| AspLEI | GCGC | 1 cut(s) | 119 |
| AspS9I | GGNCC | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 1 cut(s) | 283 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| BbvI | GCAGC | 2 cut(s) | 43, 384 |
| BceAI | ACGGC | 2 cut(s) | 139, 326 |
| BciT130I | CCWGG | 1 cut(s) | 320 |
| BfmI | CTRYAG | 1 cut(s) | 398 |
| BfuAI | ACCTGC | 1 cut(s) | 391 |
| BisI | GCNGC | 3 cut(s) | 32, 120, 398 |
| BlsI | GCNGC | 3 cut(s) | 33, 121, 399 |
| Bme1390I | CCNGG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BmrFI | CCNGG | 1 cut(s) | 320 |
| BmrI | ACTGGG | 1 cut(s) | 231 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BmuI | ACTGGG | 1 cut(s) | 231 |
| BsaHI | GRCGYC | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 3 cut(s) | 62, 318, 330 |
| BsaWI | WCCGGW | 1 cut(s) | 72 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 73, 103 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 133, 331 |
| Bse1I | ACTGG | 1 cut(s) | 237 |
| BseAI | TCCGGA | 1 cut(s) | 72 |
| BseBI | CCWGG | 1 cut(s) | 320 |
| BseDI | CCNNGG | 3 cut(s) | 62, 318, 330 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 133, 331 |
| BseNI | ACTGG | 1 cut(s) | 237 |
| BseXI | GCAGC | 2 cut(s) | 43, 384 |
| Bsh1236I | CGCG | 2 cut(s) | 117, 119 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BsiSI | CCGG | 1 cut(s) | 73 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 133, 331 |
| BsnI | GGCC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp13I | TCCGGA | 1 cut(s) | 72 |
| Bsp19I | CCATGG | 1 cut(s) | 62 |
| BspACI | CCGC | 8 cut(s) | 78, 115, 119, 152, 249, 295, 315, 422 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspEI | TCCGGA | 1 cut(s) | 72 |
| BspFNI | CGCG | 2 cut(s) | 117, 119 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspMAI | CTGCAG | 1 cut(s) | 402 |
| BspMI | ACCTGC | 1 cut(s) | 391 |
| BsrBI | CCGCTC | 1 cut(s) | 78 |
| BsrI | ACTGG | 1 cut(s) | 237 |
| BssECI | CCNNGG | 3 cut(s) | 62, 318, 330 |
| BssNI | GRCGYC | 1 cut(s) | 336 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| Bst2UI | CCWGG | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 1 cut(s) | 352 |
| BstACI | GRCGYC | 1 cut(s) | 336 |
| BstC8I | GCNNGC | 1 cut(s) | 124 |
| BstDSI | CCRYGG | 1 cut(s) | 62 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 329 |
| BstFNI | CGCG | 2 cut(s) | 117, 119 |
| BstHHI | GCGC | 1 cut(s) | 119 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 123, 414 |
| BstNI | CCWGG | 1 cut(s) | 320 |
| BstSCI | CCNGG | 1 cut(s) | 318 |
| BstSFI | CTRYAG | 1 cut(s) | 398 |
| BstUI | CGCG | 2 cut(s) | 117, 119 |
| BstV1I | GCAGC | 2 cut(s) | 43, 384 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BtgI | CCRYGG | 1 cut(s) | 62 |
| BtgZI | GCGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 386 |
| BveI | ACCTGC | 1 cut(s) | 391 |
| Cac8I | GCNNGC | 1 cut(s) | 124 |
| CaiI | CAGNNNCTG | 1 cut(s) | 37 |
| CfoI | GCGC | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 1 cut(s) | 322 |
| CviAII | CATG | 1 cut(s) | 63 |
| CviJI | RGCY | 7 cut(s) | 34, 122, 170, 191, 304, 323, 417 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 122, 170, 191, 304, 323, 417 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| EciI | GGCGGA | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 329 |
| EcoO109I | RGGNCCY | 1 cut(s) | 322 |
| EcoRII | CCWGG | 1 cut(s) | 318 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| FaeI | CATG | 1 cut(s) | 66 |
| FaiI | YATR | 4 cut(s) | 46, 64, 108, 227 |
| FatI | CATG | 1 cut(s) | 62 |
| FauI | CCCGC | 3 cut(s) | 71, 159, 302 |
| FblI | GTMKAC | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 3 cut(s) | 32, 120, 398 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| Fsp4HI | GCNGC | 3 cut(s) | 32, 120, 398 |
| GlaI | GCGC | 1 cut(s) | 118 |
| GluI | GCNGC | 3 cut(s) | 32, 120, 398 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| HapII | CCGG | 1 cut(s) | 73 |
| HhaI | GCGC | 1 cut(s) | 119 |
| Hin1I | GRCGYC | 1 cut(s) | 336 |
| Hin1II | CATG | 1 cut(s) | 66 |
| Hin6I | GCGC | 1 cut(s) | 117 |
| HinP1I | GCGC | 1 cut(s) | 117 |
| HincII | GTYRAC | 2 cut(s) | 346, 355 |
| HindII | GTYRAC | 2 cut(s) | 346, 355 |
| HinfI | GANTC | 1 cut(s) | 392 |
| HpaII | CCGG | 1 cut(s) | 73 |
| HphI | GGTGA | 1 cut(s) | 283 |
| Hpy166II | GTNNAC | 2 cut(s) | 346, 355 |
| Hpy188I | TCNGA | 1 cut(s) | 174 |
| Hpy188III | TCNNGA | 1 cut(s) | 73 |
| Hpy8I | GTNNAC | 2 cut(s) | 346, 355 |
| Hpy99I | CGWCG | 3 cut(s) | 341, 356, 359 |
| HpyAV | CCTTC | 1 cut(s) | 255 |
| HpyCH4III | ACNGT | 1 cut(s) | 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 336 |
| HpyCH4V | TGCA | 2 cut(s) | 400, 408 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 123, 414 |
| HpySE526I | ACGT | 1 cut(s) | 336 |
| Hsp92I | GRCGYC | 1 cut(s) | 336 |
| Hsp92II | CATG | 1 cut(s) | 66 |
| HspAI | GCGC | 1 cut(s) | 117 |
| Kpn2I | TCCGGA | 1 cut(s) | 72 |
| LmnI | GCTCC | 3 cut(s) | 28, 75, 175 |
| LpnPI | CCDG | 9 cut(s) | 23, 34, 86, 151, 250, 305, 332, 386, 427 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 384 |
| LweI | GCATC | 1 cut(s) | 91 |
| MaeII | ACGT | 1 cut(s) | 336 |
| MbiI | CCGCTC | 1 cut(s) | 78 |
| MboII | GAAGA | 2 cut(s) | 50, 154 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 4 cut(s) | 128, 260, 367, 409 |
| MlyI | GAGTC | 1 cut(s) | 386 |
| MmeI | TCCRAC | 1 cut(s) | 256 |
| MnlI | CCTC | 6 cut(s) | 75, 223, 252, 299, 325, 395 |
| MroI | TCCGGA | 1 cut(s) | 72 |
| MspI | CCGG | 1 cut(s) | 73 |
| MspR9I | CCNGG | 1 cut(s) | 320 |
| MunI | CAATTG | 1 cut(s) | 128 |
| MvaI | CCWGG | 1 cut(s) | 320 |
| MvnI | CGCG | 2 cut(s) | 117, 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 123, 414 |
| NcoI | CCATGG | 1 cut(s) | 62 |
| NlaIII | CATG | 1 cut(s) | 66 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| NmeAIII | GCCGAG | 2 cut(s) | 355, 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 133 |
| PkrI | GCNGC | 3 cut(s) | 33, 121, 399 |
| PleI | GAGTC | 1 cut(s) | 386 |
| PpsI | GAGTC | 1 cut(s) | 386 |
| Psp6I | CCWGG | 1 cut(s) | 318 |
| PspGI | CCWGG | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| PspPI | GGNCC | 1 cut(s) | 322 |
| PstI | CTGCAG | 1 cut(s) | 402 |
| PstNI | CAGNNNCTG | 1 cut(s) | 37 |
| SalI | GTCGAC | 1 cut(s) | 353 |
| SatI | GCNGC | 3 cut(s) | 32, 120, 398 |
| Sau96I | GGNCC | 1 cut(s) | 322 |
| SchI | GAGTC | 1 cut(s) | 386 |
| ScrFI | CCNGG | 1 cut(s) | 320 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 7 cut(s) | 36, 187, 193, 306, 339, 405, 419 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| SfcI | CTRYAG | 1 cut(s) | 398 |
| SgrDI | CGTCGACG | 1 cut(s) | 353 |
| Sse9I | AATT | 4 cut(s) | 128, 260, 367, 409 |
| SsiI | CCGC | 8 cut(s) | 78, 115, 119, 152, 249, 295, 315, 422 |
| StyD4I | CCNGG | 1 cut(s) | 318 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaaI | ACNGT | 1 cut(s) | 352 |
| TaiI | ACGT | 1 cut(s) | 339 |
| TaqI | TCGA | 3 cut(s) | 50, 264, 354 |
| TasI | AATT | 4 cut(s) | 128, 260, 367, 409 |
| TauI | GCSGC | 1 cut(s) | 122 |
| TscAI | CASTG | 1 cut(s) | 386 |
| TseI | GCWGC | 2 cut(s) | 31, 397 |
| TspDTI | ATGAA | 3 cut(s) | 17, 33, 183 |
| TspRI | CASTG | 1 cut(s) | 386 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 133 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 329 |
| XmiI | GTMKAC | 1 cut(s) | 354 |
| ZraI | GACGTC | 1 cut(s) | 337 |