Rh4DG214200

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000177
Physical Location & Seq
Forward (+)
41127905 .. 41155636
27732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG214200.1

Sequence Viewer

Length: 465 bp
ATGTCAACTTCTTCAGCTGGAGAAGGAACTGTCCTTCATTTTGGGGGCCTGAAGAGCTACGTCACTGGCTCAACTGAATCTAAGCTTGCAGTCCTTCTAGTCTCCAATGTTGTTGGATATGAATACCCAAACTTAAGGAAACTTGCGGATAAAGTTGCTGCAGCTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTATGGCGACCCTGTGAATTTTGATAATCCTCAATTCGACCGAGAGTCCTGGTTAATAGCTCACAGCAAGATGTCAACTTCTGCAGCTTGCTTCGAGAACCCACCAACACTAAGCTCAACGTACGGAAAAGGAACTGTCCTAGAATTTGGGGGCCTGAAGACTTACGTTACTGGCTCAACTGAATCTAAGCTTGCAGTCCTTCTAGTCTCCAATGTTTTTGGTACCAACCCGTCAACGTTTTTCTCCATCAATCTTTGTTGCACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

154

Amino Acids

16.45

Weight (kDa)

5.59

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 18 - 82 4.2e-07 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AciI CCGC 1 cut(s) 146
AclI AACGTT 1 cut(s) 431
AcsI RAATTY 2 cut(s) 211, 338
AcuI CTGAAG 2 cut(s) 71, 371
AfaI GTAC 2 cut(s) 317, 418
AflII CTTAAG 1 cut(s) 133
AhdI GACNNNNNGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 8 cut(s) 17, 57, 85, 164, 254, 281, 309, 385
AluI AGCT 8 cut(s) 17, 57, 85, 164, 254, 281, 309, 385
Alw26I GTCTC 2 cut(s) 106, 406
AoxI GGCC 2 cut(s) 46, 346
ApeKI GCWGC 3 cut(s) 158, 161, 278
ApoI RAATTY 2 cut(s) 211, 338
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 46, 346
BanI GGYRCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 145, 173, 290
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 106, 406
BfaI CTAG 3 cut(s) 98, 335, 398
BfmI CTRYAG 2 cut(s) 159, 276
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 3 cut(s) 159, 162, 279
BlsI GCNGC 3 cut(s) 160, 163, 280
Bme1390I CCNGG 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 46, 346
BmiI GGNNCC 4 cut(s) 47, 183, 347, 418
BmrFI CCNGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 70, 370
BseBI CCWGG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 70, 370
BseXI GCAGC 3 cut(s) 145, 173, 290
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 48, 348
BshNI GGYRCC 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 235
BsiWI CGTACG 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 106, 406
BsnI GGCC 2 cut(s) 48, 348
BspACI CCGC 1 cut(s) 146
BspANI GGCC 2 cut(s) 48, 348
BspLI GGNNCC 4 cut(s) 47, 183, 347, 418
BspMAI CTGCAG 2 cut(s) 163, 280
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 416
BspTI CTTAAG 1 cut(s) 133
BsrI ACTGG 2 cut(s) 70, 370
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 31, 331
Bst6I CTCTTC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 87, 283, 387
BstDEI CTNAG 3 cut(s) 81, 305, 381
BstMAI GTCTC 2 cut(s) 106, 406
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 159, 276
BstV1I GCAGC 3 cut(s) 145, 173, 290
BstV2I GAAGAC 1 cut(s) 359
BsuRI GGCC 2 cut(s) 48, 348
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 87, 283, 387
Cfr13I GGNCC 2 cut(s) 46, 346
Csp6I GTAC 2 cut(s) 316, 417
CviQI GTAC 2 cut(s) 316, 417
DdeI CTNAG 3 cut(s) 81, 305, 381
DriI GACNNNNNGTC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 71, 371
EcoO109I RGGNCCY 2 cut(s) 46, 346
EcoRII CCWGG 1 cut(s) 242
FaiI YATR 2 cut(s) 120, 198
Fnu4HI GCNGC 3 cut(s) 159, 162, 279
Fsp4HI GCNGC 3 cut(s) 159, 162, 279
FspBI CTAG 3 cut(s) 98, 335, 398
GluI GCNGC 3 cut(s) 159, 162, 279
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 48, 348
HincII GTYRAC 3 cut(s) 6, 270, 429
HindII GTYRAC 3 cut(s) 6, 270, 429
HindIII AAGCTT 2 cut(s) 83, 383
HinfI GANTC 3 cut(s) 77, 239, 377
Hpy166II GTNNAC 3 cut(s) 6, 270, 429
Hpy188III TCNNGA 2 cut(s) 185, 289
Hpy8I GTNNAC 3 cut(s) 6, 270, 429
HpyAV CCTTC 4 cut(s) 17, 44, 104, 404
HpyCH4III ACNGT 2 cut(s) 31, 331
HpyCH4IV ACGT 4 cut(s) 60, 314, 360, 431
HpyCH4V TGCA 5 cut(s) 89, 161, 278, 389, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 3 cut(s) 81, 305, 381
HpySE526I ACGT 4 cut(s) 60, 314, 360, 431
KpnI GGTACC 1 cut(s) 420
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 9 cut(s) 3, 51, 62, 150, 219, 229, 256, 351, 362
Lsp1109I GCAGC 3 cut(s) 145, 173, 290
MaeI CTAG 3 cut(s) 98, 335, 398
MaeII ACGT 4 cut(s) 60, 314, 360, 431
MaeIII GTNAC 2 cut(s) 61, 361
MboII GAAGA 3 cut(s) 3, 64, 364
MluCI AATT 4 cut(s) 211, 227, 338, 459
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 234
MseI TTAA 2 cut(s) 134, 248
MspA1I CMGCKG 2 cut(s) 17, 164
MspCI CTTAAG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 54
NlaIV GGNNCC 4 cut(s) 47, 183, 347, 418
NmuCI GTSAC 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 77, 377
Pfl23II CGTACG 1 cut(s) 315
PkrI GCNGC 3 cut(s) 160, 163, 280
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspLI CGTACG 1 cut(s) 315
PspN4I GGNNCC 4 cut(s) 47, 183, 347, 418
PspPI GGNCC 2 cut(s) 46, 346
PstI CTGCAG 2 cut(s) 163, 280
PvuII CAGCTG 2 cut(s) 17, 164
RsaI GTAC 2 cut(s) 317, 418
RsaNI GTAC 2 cut(s) 316, 417
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 134, 248
SatI GCNGC 3 cut(s) 159, 162, 279
Sau96I GGNCC 2 cut(s) 46, 346
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 244
SfcI CTRYAG 2 cut(s) 159, 276
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 4 cut(s) 211, 227, 338, 459
SsiI CCGC 1 cut(s) 146
SspMI CTAG 3 cut(s) 98, 335, 398
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 31, 331
TaiI ACGT 4 cut(s) 63, 317, 363, 434
TaqI TCGA 2 cut(s) 231, 288
TaqII GACCGA 1 cut(s) 249
TasI AATT 4 cut(s) 211, 227, 338, 459
TfiI GAWTC 2 cut(s) 77, 377
Tru1I TTAA 2 cut(s) 134, 248
Tru9I TTAA 2 cut(s) 134, 248
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 158, 161, 278
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 26, 135
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 70
Vha464I CTTAAG 1 cut(s) 133
XapI RAATTY 2 cut(s) 211, 338
XspI CTAG 3 cut(s) 98, 335, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.