Prupe.8G245600_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000177
Physical Location & Seq
Forward (+)
21333279 .. 21336520
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G245600.1

Sequence Viewer

Length: 723 bp
ATGTCGGGGCCTCAGTGCTGTGAAAACCCACCAACCCTTAGCTCAAGCTCCGGAGCTGGTTCAGTGACTGAAATTGGAGGCTTAAAAGCCTACGTTGCTGGCCCTTCTGATTCCAAGCAGGCCATTCTTCTCGTTTCTGATGTATATGGATTTGAAGCACCAAACCTAAGGAAGCTGGCCGACAAAATAGCTAGTGCTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCCTACGTACCGGACAATGCTGAGAGGCCTGTATCAGTTTGGATACAATCTCATGGAACAGGCAAAGGATTTGAAGATGCTAAACCTATAATTGCTGCTCTAAGGAACAAAGGGGTATCGAAGATAGGAGCAGCAGGATTCTGTTGGGGTGCCAAGGTGGTGGTGGAGCTAGCAAAGTCTGATTACATTCAAGCCGCAGTGTTGCTACACCCTTCCCTTGTCACAGTTGATGATATTAAAGAGATTAAGGCTCCAATAGCCATATTGGGTGCTGAATTTGACAAGATCTCTCCACCTGAACTCCTGAAAAAGTACGAGGAGGTTTTATCCAGTAAGCCTGAGGTTAATGGCTATGTGAAAATATTTCCTGGTGTTCCACATGGATGGACTGTCAGGTACAAGGAAGAGGATGAGGCTGCTGTCAAGCATGCTGGAGAAGCCCATCATGATTTGTTGGCCTGGTTTACTCAGCATGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

241

Amino Acids

25.72

Weight (kDa)

5.9

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 3 cut(s) 249, 554, 638
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 3 cut(s) 155, 314, 431
AjnI CCWGG 2 cut(s) 607, 698
AluBI AGCT 6 cut(s) 42, 48, 56, 175, 191, 409
AluI AGCT 6 cut(s) 42, 48, 56, 175, 191, 409
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 6 cut(s) 8, 100, 120, 177, 266, 696
ApeKI GCWGC 4 cut(s) 197, 335, 371, 656
ApoI RAATTY 1 cut(s) 515
AspS9I GGNCC 2 cut(s) 8, 101
AsuNHI GCTAGC 1 cut(s) 409
AxyI CCTNAGG 2 cut(s) 167, 579
BanI GGYRCC 1 cut(s) 389
BbvI GCAGC 4 cut(s) 184, 322, 383, 643
BccI CCATC 2 cut(s) 618, 690
BciT130I CCWGG 2 cut(s) 609, 700
BciVI GTATCC 1 cut(s) 276
BfaI CTAG 2 cut(s) 192, 410
BfuI GTATCC 1 cut(s) 276
BglII AGATCT 1 cut(s) 525
BisI GCNGC 5 cut(s) 198, 336, 372, 435, 657
BlsI GCNGC 5 cut(s) 199, 337, 373, 436, 658
Bme1390I CCNGG 2 cut(s) 609, 700
BmgT120I GGNCC 2 cut(s) 8, 101
BmiI GGNNCC 4 cut(s) 9, 219, 391, 492
BmrFI CCNGG 2 cut(s) 609, 700
BmsI GCATC 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 693
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 2 cut(s) 50, 250
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 570
Bse21I CCTNAGG 2 cut(s) 167, 579
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 2 cut(s) 609, 700
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 629, 655
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 4 cut(s) 26, 252, 570, 722
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 4 cut(s) 184, 322, 383, 643
BshFI GGCC 6 cut(s) 10, 102, 122, 179, 268, 698
BshNI GGYRCC 1 cut(s) 389
BsiSI CCGG 2 cut(s) 51, 251
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 6 cut(s) 10, 102, 122, 179, 268, 698
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 238, 525
BspACI CCGC 1 cut(s) 435
BspANI GGCC 6 cut(s) 10, 102, 122, 179, 268, 698
BspCNI CTCAG 4 cut(s) 25, 253, 571, 721
BspEI TCCGGA 1 cut(s) 50
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 9, 219, 391, 492
BspOI GCTAGC 1 cut(s) 413
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 389
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 238, 525
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 2 cut(s) 609, 700
Bst4CI ACNGT 2 cut(s) 466, 631
Bst6I CTCTTC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 5 cut(s) 100, 120, 177, 411, 669
BstDEI CTNAG 7 cut(s) 12, 38, 167, 261, 341, 579, 708
BstF5I GGATG 2 cut(s) 629, 655
BstKTI GATC 2 cut(s) 241, 528
BstMBI GATC 2 cut(s) 238, 525
BstMWI GCNNNNNNNGC 4 cut(s) 95, 197, 497, 677
BstNI CCWGG 2 cut(s) 609, 700
BstNSI RCATGY 2 cut(s) 671, 716
BstSCI CCNGG 2 cut(s) 607, 698
BstSNI TACGTA 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 184, 322, 383, 643
BstX2I RGATCY 2 cut(s) 238, 525
BstXI CCANNNNNNTGG 2 cut(s) 400, 624
BstYI RGATCY 2 cut(s) 238, 525
Bsu36I CCTNAGG 2 cut(s) 167, 579
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 6 cut(s) 10, 102, 122, 179, 268, 698
BtsCI GGATG 2 cut(s) 629, 655
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 20, 69, 444
Cac8I GCNNGC 5 cut(s) 100, 120, 177, 411, 669
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 8, 101
Csp6I GTAC 3 cut(s) 248, 553, 637
CviAII CATG 6 cut(s) 209, 293, 620, 668, 686, 713
CviQI GTAC 3 cut(s) 248, 553, 637
DdeI CTNAG 7 cut(s) 12, 38, 167, 261, 341, 579, 708
DpnI GATC 2 cut(s) 240, 527
DpnII GATC 2 cut(s) 238, 525
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco105I TACGTA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 268
Eco81I CCTNAGG 2 cut(s) 167, 579
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 607, 698
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 6 cut(s) 212, 296, 623, 671, 689, 716
FatI CATG 6 cut(s) 208, 292, 619, 667, 685, 712
Fnu4HI GCNGC 5 cut(s) 198, 336, 372, 435, 657
FokI GGATG 2 cut(s) 636, 662
Fsp4HI GCNGC 5 cut(s) 198, 336, 372, 435, 657
FspBI CTAG 2 cut(s) 192, 410
GluI GCNGC 5 cut(s) 198, 336, 372, 435, 657
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 6 cut(s) 10, 102, 122, 179, 268, 698
HapII CCGG 2 cut(s) 51, 251
Hin1II CATG 6 cut(s) 212, 296, 623, 671, 689, 716
HinfI GANTC 3 cut(s) 110, 204, 378
HpaII CCGG 2 cut(s) 51, 251
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 3 cut(s) 109, 139, 421
Hpy188III TCNNGA 4 cut(s) 51, 221, 544, 686
Hpy8I GTNNAC 1 cut(s) 705
HpyAV CCTTC 2 cut(s) 114, 462
HpyCH4III ACNGT 2 cut(s) 466, 631
HpyCH4IV ACGT 2 cut(s) 93, 246
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 197, 497, 677
HpyF3I CTNAG 7 cut(s) 12, 38, 167, 261, 341, 579, 708
HpySE526I ACGT 2 cut(s) 93, 246
Hsp92II CATG 6 cut(s) 212, 296, 623, 671, 689, 716
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 2 cut(s) 238, 525
LmnI GCTCC 5 cut(s) 53, 53, 368, 406, 496
Lsp1109I GCAGC 4 cut(s) 184, 322, 383, 643
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 192, 410
MaeII ACGT 2 cut(s) 93, 246
MaeIII GTNAC 2 cut(s) 64, 460
MalI GATC 2 cut(s) 240, 527
MboI GATC 2 cut(s) 238, 525
MboII GAAGA 4 cut(s) 119, 326, 373, 656
MflI RGATCY 2 cut(s) 238, 525
MluCI AATT 3 cut(s) 72, 330, 515
MnlI CCTC 8 cut(s) 21, 71, 258, 550, 553, 574, 640, 646
MroI TCCGGA 1 cut(s) 50
MseI TTAA 4 cut(s) 83, 477, 486, 585
MslI CAYNNNNRTG 1 cut(s) 622
MspI CCGG 2 cut(s) 51, 251
MspR9I CCNGG 2 cut(s) 609, 700
MvaI CCWGG 2 cut(s) 609, 700
MwoI GCNNNNNNNGC 4 cut(s) 95, 197, 497, 677
NdeII GATC 2 cut(s) 238, 525
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 6 cut(s) 212, 296, 623, 671, 689, 716
NlaIV GGNNCC 4 cut(s) 9, 219, 391, 492
NmuCI GTSAC 2 cut(s) 64, 460
NspI RCATGY 2 cut(s) 671, 716
PaeI GCATGC 1 cut(s) 671
PagI TCATGA 1 cut(s) 685
PceI AGGCCT 1 cut(s) 268
PfeI GAWTC 3 cut(s) 110, 204, 378
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 5 cut(s) 199, 337, 373, 436, 658
Ppu21I YACGTR 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 607, 698
PspGI CCWGG 2 cut(s) 607, 698
PspN4I GGNNCC 4 cut(s) 9, 219, 391, 492
PspPI GGNCC 2 cut(s) 8, 101
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 2 cut(s) 238, 525
RsaI GTAC 3 cut(s) 249, 554, 638
RsaNI GTAC 3 cut(s) 248, 553, 637
RseI CAYNNNNRTG 1 cut(s) 622
SaqAI TTAA 4 cut(s) 83, 477, 486, 585
SatI GCNGC 5 cut(s) 198, 336, 372, 435, 657
Sau3AI GATC 2 cut(s) 238, 525
Sau96I GGNCC 2 cut(s) 8, 101
ScrFI CCNGG 2 cut(s) 609, 700
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 622
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SnaBI TACGTA 1 cut(s) 247
SphI GCATGC 1 cut(s) 671
Sse9I AATT 3 cut(s) 72, 330, 515
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 1 cut(s) 435
SspI AATATT 1 cut(s) 603
SspMI CTAG 2 cut(s) 192, 410
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 607, 698
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 466, 631
TaiI ACGT 2 cut(s) 96, 249
TaqI TCGA 1 cut(s) 359
TasI AATT 3 cut(s) 72, 330, 515
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 3 cut(s) 110, 204, 378
Tru1I TTAA 4 cut(s) 83, 477, 486, 585
Tru9I TTAA 4 cut(s) 83, 477, 486, 585
TscAI CASTG 3 cut(s) 20, 69, 444
TseFI GTSAC 2 cut(s) 64, 460
TseI GCWGC 4 cut(s) 197, 335, 371, 656
Tsp45I GTSAC 2 cut(s) 64, 460
TspRI CASTG 3 cut(s) 20, 69, 444
Van91I CCANNNNNTGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 671, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 2 cut(s) 192, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.