Rw2G028580

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000177
Physical Location & Seq
Reverse (-)
45828211 .. 45831465
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028580.1

Sequence Viewer

Length: 717 bp
ATGTCAGGCCCTCAGTGCTGTTCTAACCCACCAATTATCAAGACAAGCTGTGGTTCAGACTCTGCTGAAAAATTTGGAGGCCTTACTGTCTATGTGACAGGATCTCCCAACTCCAAGCGTGCTATTCTTCTTATCTCTGATGTTTTTGGATATGGAGCTCCCAACTTGAGGAAGCTTGCACGAAGAGTTGCCACATCTGGATTCTATGTTGTAGTTCCAGACTTCTTCTATGGAGATGCGTTTGTGTATGACAATAACAGGCCTCTAGCAGTCTGGTTAAAAGATCATGGAACGGATAAGGGATTTGAAGATGCAAAATCAGTGATTGACGCTCTAATACGTCAAGGTTTTTCTGCAATTGGAGCTGCAGGCTTCTGTTGGGGTGGCAAGGTCGTGACCGAACTTGCGAAGTCTGAGTTCATCCAAGCTGCTGTGCTATTGCATCCTTCATTTATTTCTGTGGATGATATTGAGGGGGTTAAATCTCCAATTGCCGTACTAGGAGCTGAGATTGACAACTACTCTCCACCAGAACTCGTGAAAGAGTTTGAGGAGATATTAAATGCTAAACCCGAGGTTGATAGCTATGTGAAGATATTTCCAAAAGTTGCACATGGTTGGGCTGTGAGGTATGATGTTGATGATGAAGCAGCTGCAAAGAGTGCAGAGGAAGCTCATAATGACATGTTGCAGTGGTTTGCTAAGCATGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

238

Amino Acids

25.88

Weight (kDa)

5.27

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 30 - 236 3.7e-31 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 168
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 9 cut(s) 48, 158, 175, 365, 428, 506, 585, 653, 674
AluI AGCT 9 cut(s) 48, 158, 175, 365, 428, 506, 585, 653, 674
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 3 cut(s) 7, 79, 260
ApeKI GCWGC 4 cut(s) 365, 428, 650, 653
ApoI RAATTY 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 572
BanII GRGCYC 1 cut(s) 160
BauI CACGAG 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 352, 415, 640, 662
BceAI ACGGC 1 cut(s) 479
BfaI CTAG 2 cut(s) 266, 500
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 4 cut(s) 366, 429, 651, 654
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 4 cut(s) 367, 430, 652, 655
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 8
BmsI GCATC 3 cut(s) 226, 301, 451
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 3 cut(s) 420, 442, 469
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 26, 405, 498
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 4 cut(s) 352, 415, 640, 662
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 3 cut(s) 9, 81, 262
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 168
BsnI GGCC 3 cut(s) 9, 81, 262
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 101, 283
Bsp1720I GCTNAGC 1 cut(s) 702
BspANI GGCC 3 cut(s) 9, 81, 262
BspCNI CTCAG 3 cut(s) 25, 406, 499
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 2 cut(s) 101, 283
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 120, 177, 370
BstDEI CTNAG 4 cut(s) 12, 414, 507, 702
BstF5I GGATG 3 cut(s) 420, 442, 469
BstKTI GATC 2 cut(s) 104, 286
BstMBI GATC 2 cut(s) 101, 283
BstMWI GCNNNNNNNGC 4 cut(s) 15, 362, 662, 671
BstNSI RCATGY 2 cut(s) 688, 710
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 352, 415, 640, 662
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 3 cut(s) 9, 81, 262
BtsCI GGATG 3 cut(s) 420, 442, 469
BtsI GCAGTG 1 cut(s) 698
BtsIMutI CAGTG 3 cut(s) 20, 327, 698
Cac8I GCNNGC 3 cut(s) 120, 177, 370
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 497
CviAII CATG 4 cut(s) 287, 614, 685, 707
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 4 cut(s) 12, 414, 507, 702
DpnI GATC 2 cut(s) 103, 285
DpnII GATC 2 cut(s) 101, 283
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 158
Eco147I AGGCCT 2 cut(s) 81, 262
Eco24I GRGCYC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 4 cut(s) 290, 617, 688, 710
FatI CATG 4 cut(s) 286, 613, 684, 706
Fnu4HI GCNGC 4 cut(s) 366, 429, 651, 654
FokI GGATG 3 cut(s) 407, 429, 476
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 366, 429, 651, 654
FspBI CTAG 2 cut(s) 266, 500
GluI GCNGC 4 cut(s) 366, 429, 651, 654
HaeIII GGCC 3 cut(s) 9, 81, 262
HgaI GACGC 1 cut(s) 338
Hin1II CATG 4 cut(s) 290, 617, 688, 710
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 59, 201
Hpy188I TCNGA 3 cut(s) 58, 139, 415
Hpy188III TCNNGA 5 cut(s) 40, 198, 218, 394, 538
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 9 cut(s) 179, 314, 356, 368, 442, 611, 656, 665, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 362, 662, 671
HpyF3I CTNAG 4 cut(s) 12, 414, 507, 702
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 4 cut(s) 290, 617, 688, 710
Kzo9I GATC 2 cut(s) 101, 283
LmnI GCTCC 4 cut(s) 155, 163, 362, 503
LpnPI CCDG 7 cut(s) 84, 183, 231, 244, 259, 354, 543
Lsp1109I GCAGC 4 cut(s) 352, 415, 640, 662
LweI GCATC 3 cut(s) 226, 301, 451
MaeI CTAG 2 cut(s) 266, 500
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 94, 394
MalI GATC 2 cut(s) 103, 285
MboI GATC 2 cut(s) 101, 283
MboII GAAGA 5 cut(s) 119, 195, 217, 320, 604
MfeI CAATTG 2 cut(s) 357, 489
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 33, 71, 357, 489
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 9 cut(s) 21, 71, 162, 273, 466, 544, 568, 621, 661
MseI TTAA 3 cut(s) 278, 480, 560
MspA1I CMGCKG 1 cut(s) 653
MunI CAATTG 2 cut(s) 357, 489
MwoI GCNNNNNNNGC 4 cut(s) 15, 362, 662, 671
NdeII GATC 2 cut(s) 101, 283
NlaIII CATG 4 cut(s) 290, 617, 688, 710
NmuCI GTSAC 2 cut(s) 94, 394
NspI RCATGY 2 cut(s) 688, 710
PceI AGGCCT 2 cut(s) 81, 262
PciI ACATGT 1 cut(s) 684
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 4 cut(s) 367, 430, 652, 655
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PscI ACATGT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 3 cut(s) 278, 480, 560
SatI GCNGC 4 cut(s) 366, 429, 651, 654
Sau3AI GATC 2 cut(s) 101, 283
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 3 cut(s) 226, 301, 451
SfcI CTRYAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 33, 71, 357, 489
SseBI AGGCCT 2 cut(s) 81, 262
SspMI CTAG 2 cut(s) 266, 500
SstI GAGCTC 1 cut(s) 160
StuI AGGCCT 2 cut(s) 81, 262
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 343
TaqII GACCGA 1 cut(s) 413
TasI AATT 4 cut(s) 33, 71, 357, 489
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 3 cut(s) 278, 480, 560
Tru9I TTAA 3 cut(s) 278, 480, 560
TscAI CASTG 3 cut(s) 20, 327, 698
TseFI GTSAC 2 cut(s) 94, 394
TseI GCWGC 4 cut(s) 365, 428, 650, 653
Tsp45I GTSAC 2 cut(s) 94, 394
TspDTI ATGAA 3 cut(s) 409, 438, 660
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 3 cut(s) 20, 327, 698
XapI RAATTY 1 cut(s) 71
XceI RCATGY 2 cut(s) 688, 710
XspI CTAG 2 cut(s) 266, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.