Rroxscaffold_5G00361850

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42550031 .. 42555798
5768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361850.1

Sequence Viewer

Length: 243 bp
ATGTCGGGCCCTCGGTGCTGCTCGAACCCACCGACCCCGAACCCAAACGGTGGATCCGGCCATGTTGAGAAGCTTGGTGGTCTCGACTCCTATCTAACTGGCTCTCCGGACTCCAAGCTTGCCATTGTTCTTGTCTCCGACATTTTTGTCTGGGCCATCGAACATTTGCTGGTTAAAGTTGATGACTTGCTAGACACTTTGAAAAATTTACTCAAAAGAGTGTTCTTTCGGAAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

80

Amino Acids

8.73

Weight (kDa)

6.71

Isoelectric Point (pI)

21.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 106
AclWI GGATC 2 cut(s) 48, 61
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 73, 118
AluI AGCT 2 cut(s) 73, 118
Alw26I GTCTC 2 cut(s) 86, 139
AlwI GGATC 2 cut(s) 48, 61
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 3 cut(s) 7, 58, 153
ApaI GGGCCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 7, 8, 153
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 86, 139
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmgT120I GGNCC 3 cut(s) 7, 8, 153
BmiI GGNNCC 2 cut(s) 9, 55
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 103
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 3 cut(s) 9, 60, 155
BsiSI CCGG 2 cut(s) 57, 107
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 86, 139
BsnI GGCC 3 cut(s) 9, 60, 155
Bso31I GGTCTC 1 cut(s) 86
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 3 cut(s) 9, 60, 155
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 9, 55
BspPI GGATC 2 cut(s) 48, 61
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 86, 139
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 3 cut(s) 9, 60, 155
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 7, 8, 153
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 9, 60, 73, 102, 118, 155
CviKI_1 RGCY 6 cut(s) 9, 60, 73, 102, 118, 155
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 65
FaiI YATR 1 cut(s) 63
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 3 cut(s) 9, 60, 155
HapII CCGG 2 cut(s) 57, 107
Hin1II CATG 1 cut(s) 65
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 2 cut(s) 57, 107
Hpy188I TCNGA 2 cut(s) 139, 231
Hpy188III TCNNGA 2 cut(s) 83, 107
HpyCH4III ACNGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 70, 84, 120, 136, 155
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 205
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 21
MroI TCCGGA 1 cut(s) 106
MseI TTAA 1 cut(s) 174
MspI CCGG 2 cut(s) 57, 107
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 53
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 9, 55
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 2 cut(s) 80, 104
PpsI GAGTC 2 cut(s) 80, 104
PspN4I GGNNCC 2 cut(s) 9, 55
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 7, 8, 153
PsuI RGATCY 1 cut(s) 53
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 3 cut(s) 7, 8, 153
SchI GAGTC 2 cut(s) 80, 104
SduI GDGCHC 1 cut(s) 11
SetI ASST 2 cut(s) 75, 120
Sse9I AATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 23, 84, 159
TasI AATT 1 cut(s) 205
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 205
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.