RchiOBHm_Chr7g0229821

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
53347821 .. 53348576
756 bp
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UTR
Exon/CDS
Intron
PRQ20590

Sequence Viewer

Length: 141 bp
ATGCTAAAAATCAGGTCAAGCTATGTGAAGATATTTCCAAAAGTTGCACATGATTGGGCTATGAGGTACGACGTTGATGATGAAGCAGCTGCAAAGAGTGCCGAGGAAGCTCATAATGACATGTTGCAGTGGTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

46

Amino Acids

5.39

Weight (kDa)

5.45

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 120
AluBI AGCT 3 cut(s) 21, 89, 110
AluI AGCT 3 cut(s) 21, 89, 110
ApeKI GCWGC 2 cut(s) 86, 89
BbvI GCAGC 2 cut(s) 76, 98
BisI GCNGC 2 cut(s) 87, 90
BlsI GCNGC 2 cut(s) 88, 91
BsaJI CCNNGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 76, 98
BssECI CCNNGG 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 98, 107
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 76, 98
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 50, 121
CviJI RGCY 4 cut(s) 21, 59, 89, 110
CviKI_1 RGCY 4 cut(s) 21, 59, 89, 110
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 138
FaeI CATG 2 cut(s) 53, 124
FaiI YATR 5 cut(s) 24, 51, 62, 114, 122
FatI CATG 2 cut(s) 49, 120
Fnu4HI GCNGC 2 cut(s) 87, 90
Fsp4HI GCNGC 2 cut(s) 87, 90
FspEI CC 7 cut(s) 40, 41, 49, 51, 89, 115, 115
GluI GCNGC 2 cut(s) 87, 90
Hin1II CATG 2 cut(s) 53, 124
Hpy99I CGWCG 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 47, 92, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 107
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 53, 124
Lsp1109I GCAGC 2 cut(s) 76, 98
MaeII ACGT 1 cut(s) 72
MboII GAAGA 1 cut(s) 40
MnlI CCTC 2 cut(s) 57, 97
MspA1I CMGCKG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 98, 107
NlaIII CATG 2 cut(s) 53, 124
NmeAIII GCCGAG 1 cut(s) 127
NspI RCATGY 1 cut(s) 124
PciI ACATGT 1 cut(s) 120
PkrI GCNGC 2 cut(s) 88, 91
PscI ACATGT 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SatI GCNGC 2 cut(s) 87, 90
SetI ASST 6 cut(s) 17, 23, 68, 75, 91, 112
SgeI CNNG 5 cut(s) 25, 30, 62, 115, 133
TaiI ACGT 1 cut(s) 75
TscAI CASTG 1 cut(s) 134
TseI GCWGC 2 cut(s) 86, 89
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 134
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.